Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022314.1 Corchorus olitorius cultivar O-4 contig22347, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 775

Length: 1293
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:252 original size:22 final size:23

Alignment explanation


    Indices: 209--258  Score: 66
    Period size: 23  Copynumber: 2.2  Consensus size: 23

        199 AAAAAAAATT

                            **     
        209 TGCGTCATAAAAAAATTTGTTTC
          1 TGCGTCATAAAAAAATAGGTTTC

                                  *
        232 TGCGTCATAAAAAAA-AGGTTTT
          1 TGCGTCATAAAAAAATAGGTTTC

                 
        254 TGCGT
          1 TGCGT

        259 TTTTCTAAAA


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  22    9  0.38
  23   15  0.62

ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36


Consensus pattern (23 bp):   
TGCGTCATAAAAAAATAGGTTTC
Done.