Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022319.1 Corchorus olitorius cultivar O-4 contig22352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2285
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35


Found at i:1284 original size:33 final size:31

Alignment explanation


    Indices: 1178--1323  Score: 123
    Period size: 33  Copynumber: 4.5  Consensus size: 31

       1168 GAGTAATTCT

                         *         *         
       1178 AAATCTGTTTTAGATGTTGTTTGCGAT-AATAC
          1 AAATCTGTTTT-GGTGTTGTTTGTGATGAA-AC

                *  **                     *  
       1210 TAAACCTAATTTGAGTGTTGTTTGTGATGACAC
          1 -AAATCTGTTTTG-GTGTTGTTTGTGATGAAAC

                                             
       1243 TAAATCTGTTTTAGGTGTTGTTTGTGATGAAAC
          1 -AAATCTGTTTT-GGTGTTGTTTGTGATGAAAC

                             * **             
       1276 AAATTCTGTTTTGGATGCTAATTGTGATGAAAAC
          1 AAA-TCTGTTTTGG-TGTTGTTTGTGATG-AAAC

                          
       1310 AAATCTGTTTTGGT
          1 AAATCTGTTTTGGT

       1324 TGATCATAGC


Statistics
Matches: 94,  Mismatches: 13, Indels: 13
        0.78            0.11        0.11

Matches are distributed among these distances:
  32    7  0.07
  33   78  0.83
  34    9  0.10

ACGTcount: A:0.27, C:0.09, G:0.21, T:0.42


Consensus pattern (31 bp):   
AAATCTGTTTTGGTGTTGTTTGTGATGAAAC
Done.