Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022341.1 Corchorus olitorius cultivar O-4 contig22374, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 614

Length: 1024
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:151 original size:3 final size:3

Alignment explanation


    Indices: 143--181  Score: 69
    Period size: 3  Copynumber: 13.0  Consensus size: 3

        133 AATTTTACAT

                                 *                             
        143 TTA TTA TTA TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

        182 CACTAATTTC


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64


Consensus pattern (3 bp):   
TTA

Found at i:904 original size:16 final size:16

Alignment explanation


    Indices: 866--911  Score: 58
    Period size: 16  Copynumber: 2.9  Consensus size: 16

        856 AGCCCAAATC

                         *  
        866 GACGATAAGG-AGCAA
          1 GACGATAAGGAAGAAA

                            
        881 GACGATAAGGAAGAAA
          1 GACGATAAGGAAGAAA

             *      *      
        897 GTCGATAAAGAAGAA
          1 GACGATAAGGAAGAA

        912 GCCAAAATTC


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  15   10  0.37
  16   17  0.63

ACGTcount: A:0.52, C:0.09, G:0.30, T:0.09


Consensus pattern (16 bp):   
GACGATAAGGAAGAAA
Done.