Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022346.1 Corchorus olitorius cultivar O-4 contig22379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12235
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:558 original size:2 final size:2

Alignment explanation


    Indices: 551--578  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        541 CACCCTTCTG

                                                     
        551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        579 CTTTTGTAAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:1075 original size:26 final size:27

Alignment explanation


    Indices: 1037--1091  Score: 69
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1027 AAAAGCAAAT

                           *           
       1037 TCAAAGCTGAAAG-GTCCAAGTGCAAG
          1 TCAAAGCTGAAAGTGCCCAAGTGCAAG

                                    *   
       1063 TCAAAGGCT-AAAGTGCCCAAGTGTAAG
          1 TCAAA-GCTGAAAGTGCCCAAGTGCAAG

              
       1090 TC
          1 TC

       1092 CGAAATCAAC


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  26    9  0.36
  27   16  0.64

ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18


Consensus pattern (27 bp):   
TCAAAGCTGAAAGTGCCCAAGTGCAAG
Done.