Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002235.1 Corchorus olitorius cultivar O-4 contig02235, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 738

Length: 1230
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30


Found at i:99 original size:21 final size:21

Alignment explanation


    Indices: 72--162  Score: 121
    Period size: 21  Copynumber: 4.3  Consensus size: 21

         62 GCTAGAAGTC

                                  
         72 CATTGGAGCAA-GTTCCAAGCT
          1 CATTGGAG-AAGGTTCCAAGCT

            *       *          * 
         93 AATTGGAGCAGGTTCCAAGTT
          1 CATTGGAGAAGGTTCCAAGCT

                               * 
        114 CATTGGAGAAGGTTCCAAGTT
          1 CATTGGAGAAGGTTCCAAGCT

                          *      
        135 CATTGGAGAAGGTTTCAAGCT
          1 CATTGGAGAAGGTTCCAAGCT

                   
        156 CATTGGA
          1 CATTGGA

        163 AATGCCTAAG


Statistics
Matches: 62,  Mismatches: 7, Indels: 2
        0.87            0.10        0.03

Matches are distributed among these distances:
  20    1  0.02
  21   61  0.98

ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27


Consensus pattern (21 bp):   
CATTGGAGAAGGTTCCAAGCT

Done.