Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022353.1 Corchorus olitorius cultivar O-4 contig22386, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7156
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:1743 original size:16 final size:15

Alignment explanation


    Indices: 1722--1764  Score: 59
    Period size: 16  Copynumber: 2.7  Consensus size: 15

       1712 TTACTCTGCT

                            
       1722 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                            
       1738 TTGTTTTTCTGTTTAA
          1 TTG-TTTTCTGTTTAA

              *        
       1754 TTATTTTCTGT
          1 TTGTTTTCTGT

       1765 CAACCTCTGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  15    8  0.32
  16   11  0.44
  17    6  0.24

ACGTcount: A:0.14, C:0.07, G:0.12, T:0.67


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA

Found at i:1762 original size:15 final size:16

Alignment explanation


    Indices: 1725--1764  Score: 55
    Period size: 15  Copynumber: 2.5  Consensus size: 16

       1715 CTCTGCTTTG

                            *
       1725 TTTTCTAGTTTAATTGT
          1 TTTTCT-GTTTAATTGA

                            
       1742 TTTTCTGTTTAATT-A
          1 TTTTCTGTTTAATTGA

                    
       1757 TTTTCTGT
          1 TTTTCTGT

       1765 CAACCTCTGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15    8  0.36
  16    8  0.36
  17    6  0.27

ACGTcount: A:0.15, C:0.07, G:0.10, T:0.68


Consensus pattern (16 bp):   
TTTTCTGTTTAATTGA
Done.