Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022356.1 Corchorus olitorius cultivar O-4 contig22389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135446
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Found at i:221 original size:19 final size:18
Alignment explanation
Indices: 197--232 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
187 TGAAGACTTA
197 TTGAAGACAATTTGAAGAT
1 TTGAAGACAA-TTGAAGAT
*
216 TTGAAGACCATTGAAGA
1 TTGAAGACAATTGAAGA
233 ATTATTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (18 bp):
TTGAAGACAATTGAAGAT
Found at i:1885 original size:28 final size:28
Alignment explanation
Indices: 1826--1956 Score: 181
Period size: 28 Copynumber: 4.6 Consensus size: 28
1816 AGTACTTGAG
* **
1826 ATGACCCAAAATGCCCCATGGATGTGTGAA
1 ATGA-CCAAAATGCCCC-TGGATATGCAAA
1856 ATGACCAAAATGCCCCTGGATATGCAAA
1 ATGACCAAAATGCCCCTGGATATGCAAA
1884 ATGACCAAAATGCCCCTGGATATGCAAA
1 ATGACCAAAATGCCCCTGGATATGCAAA
** * *
1912 ATGACCAAAATGCCCCTAAACATACAAA
1 ATGACCAAAATGCCCCTGGATATGCAAA
1940 ATGACCAAAATGCCCCT
1 ATGACCAAAATGCCCCT
1957 TTAAGTGACC
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
28 78 0.83
29 12 0.13
30 4 0.04
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.18
Consensus pattern (28 bp):
ATGACCAAAATGCCCCTGGATATGCAAA
Found at i:3806 original size:17 final size:17
Alignment explanation
Indices: 3784--3824 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
3774 AAAATTCCTT
3784 GAACTCTACCAACTTTA
1 GAACTCTACCAACTTTA
3801 GAACTCTACCAACTTTA
1 GAACTCTACCAACTTTA
3818 GAACTCT
1 GAACTCT
3825 CACTCAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.34, C:0.29, G:0.07, T:0.29
Consensus pattern (17 bp):
GAACTCTACCAACTTTA
Found at i:4327 original size:12 final size:12
Alignment explanation
Indices: 4310--4346 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
4300 CTCCTCAAAG
*
4310 TCTTCTTCTGGA
1 TCTTCTTCCGGA
4322 TCTTCTTCCGGA
1 TCTTCTTCCGGA
4334 TCTTCTTCCGGA
1 TCTTCTTCCGGA
4346 T
1 T
4347 TAGATTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.30, G:0.16, T:0.46
Consensus pattern (12 bp):
TCTTCTTCCGGA
Found at i:10861 original size:49 final size:50
Alignment explanation
Indices: 10735--10974 Score: 299
Period size: 50 Copynumber: 4.8 Consensus size: 50
10725 GAGTGTGGGG
*
10735 TAATAAAAAATGTAATCTTTATGTTAAAAGATGAAAATTTTAATTGACTTA
1 TAAT-AAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTA
*
10786 TAATCAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTA
1 TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTA
10836 TAATAAAAATGTAATCTTT-TGTTAAAAGATGAAATTTTTAATTGACTTA
1 TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTA
** * * ** *
10885 TAA-AAACAATGTAATCTTTCA-ACTAAAAGATGAGACTTTTGGTT-AATTAA
1 TAATAAA-AATGTAATCTTT-ATGTTAAAAGATGAAATTTTTAATTGACTT-A
* * * *
10935 TAACAAAAATGAAATCTTTAAGCTAAAAGATGAAATTTTT
1 TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTT
10975 GACTAATTTG
Statistics
Matches: 169, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
48 3 0.02
49 49 0.29
50 110 0.65
51 7 0.04
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.38
Consensus pattern (50 bp):
TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTA
Found at i:10875 original size:99 final size:100
Alignment explanation
Indices: 10735--10974 Score: 299
Period size: 99 Copynumber: 2.4 Consensus size: 100
10725 GAGTGTGGGG
* *
10735 TAATAAAAAATGTAATCTTTATGTTAAAAGATGAAAATTTTAATTGACTTATAATCAA-AATGTA
1 TAAT-AAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTATAA-AAACAATGTA
** * *
10799 ATCTTT-ATGTTAAAAGATGAAATTTTTAATTGACTT-A
64 ATCTTTCA-ACTAAAAGATGAAACTTTTAATT-AATTAA
10836 TAATAAAAATGTAATCTTT-TGTTAAAAGATGAAATTTTTAATTGACTTATAAAAACAATGTAAT
1 TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTATAAAAACAATGTAAT
* **
10900 CTTTCAACTAAAAGATGAGACTTTTGGTTAATTAA
66 CTTTCAACTAAAAGATGAAACTTTTAATTAATTAA
* * * *
10935 TAACAAAAATGAAATCTTTAAGCTAAAAGATGAAATTTTT
1 TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTT
10975 GACTAATTTG
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
98 5 0.04
99 79 0.65
100 34 0.28
101 4 0.03
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.38
Consensus pattern (100 bp):
TAATAAAAATGTAATCTTTATGTTAAAAGATGAAATTTTTAATTGACTTATAAAAACAATGTAAT
CTTTCAACTAAAAGATGAAACTTTTAATTAATTAA
Found at i:11020 original size:51 final size:50
Alignment explanation
Indices: 10939--11054 Score: 162
Period size: 50 Copynumber: 2.3 Consensus size: 50
10929 AATTAATAAC
* *
10939 AAAAATGAAATCTTTAAGCTAAAAGATGAAATTTTTGACTAATTTGTGAAT
1 AAAAATGAAATCTTTAAGCTAAAAGATGAAA-ATTTGACTAATTTGTCAAT
* * *
10990 TAAAATGAGATCTTTAAG-TAAAAGATTGAAAATTTGATTAATTTGTCAAT
1 AAAAATGAAATCTTTAAGCTAAAAGA-TGAAAATTTGACTAATTTGTCAAT
11040 AAAAATGAAATCTTT
1 AAAAATGAAATCTTT
11055 GGATTAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
50 36 0.63
51 21 0.37
ACGTcount: A:0.46, C:0.05, G:0.13, T:0.36
Consensus pattern (50 bp):
AAAAATGAAATCTTTAAGCTAAAAGATGAAAATTTGACTAATTTGTCAAT
Found at i:11096 original size:101 final size:100
Alignment explanation
Indices: 10991--11378 Score: 363
Period size: 101 Copynumber: 3.9 Consensus size: 100
10981 TTTGTGAATT
* * ** **
10991 AAAATGAGATCTTT-AAGTAAAAGATTGAAAATTTGATTAATTTGTCAATAAAAATGAAATCTTT
1 AAAATGAAATCTTTGAAGTAAAAAATTGAACTTTTGATTAA-TTAACAATAAAAATGAAATCTTT
11055 GGATTAAAAAATTTGAACTTTTGGTTGATTAACAATA
65 GGATTAAAAAA-TTGAACTTTTGGTTGATTAACAATA
* * * * *
11092 AAAATGAAATCTTTGGATTAAAAAAATTGAACTTTTGGTTGATTAACAATAAAAATGAAATATTT
1 AAAATGAAATCTTTGAAGT-AAAAAATTGAACTTTTGATTAATTAACAATAAAAATGAAATCTTT
*
11157 GGATTAAAAAATTTGAACTTTTGGTTGATTAACAATT
65 GGATTAAAAAA-TTGAACTTTTGGTTGATTAACAATA
* * * * * *
11194 AAAATAAAATCTTTGGATTAAAAAATTGAACTTTTGGTTAATTAACAACAAAAATGAGATCTTTG
1 AAAATGAAATCTTTGAAGTAAAAAATTGAACTTTTGATTAATTAACAATAAAAATGAAATCTTTG
* * * * * *
11259 GACTAAAAGATTGAACATTTGATTAATTTGTA-AATA
66 GATTAAAAAATTGAACTTTTGGTTGA-TT-AACAATA
* * * * *** * *
11295 AAAATGAGATCTTT-AAGCTAAAAAATTGGACTTTTAAGTAATTTGTAA-AAAAGATGTAACCTT
1 AAAATGAAATCTTTGAAG-TAAAAAATTGAACTTTTGATTAATTAACAATAAAA-ATGAAATCTT
*
11358 T-GAGTAAAAAATTGAACTTTT
64 TGGATTAAAAAATTGAACTTTT
11379 AAGTAATTTG
Statistics
Matches: 240, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
100 35 0.15
101 111 0.46
102 77 0.32
103 17 0.07
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.36
Consensus pattern (100 bp):
AAAATGAAATCTTTGAAGTAAAAAATTGAACTTTTGATTAATTAACAATAAAAATGAAATCTTTG
GATTAAAAAATTGAACTTTTGGTTGATTAACAATA
Found at i:11100 original size:152 final size:150
Alignment explanation
Indices: 10919--11782 Score: 531
Period size: 152 Copynumber: 5.8 Consensus size: 150
10909 AAAAGATGAG
* * *
10919 ACTTTTGGTTAATTAATAACAAAAATGAAATCTTTA-AGCTAAAAGA-TGAAATTTTTGACTAAT
1 ACTTTTGGTTAATTAACAACAAAAATGAAATCTTTAGA-CTAAAAGATTG-AACTTTTGATTAAT
* * ** *
10982 TTGTGAATTAAAATGAGATCTTTAAGTAAAAGATTGAAAATTTGATTAATTTGTCAATAAAAATG
64 TTGT-AATAAAAATGAGATCTTTAAGTAAAAAATTGAACTTTTAATTAATTTGTCAATAAAAATG
11047 AAATCTTTGGATTAAAAAATTTGA
128 AAATCTTTGGATTAAAAAA-TTGA
* * * * * * *
11071 ACTTTTGGTTGATTAACAATAAAAATGAAATCTTTGGATTAAAAAAATTGAACTTTTGGTTGATT
1 ACTTTTGGTTAATTAACAACAAAAATGAAATCTTTAGACT-AAAAGATTGAACTTTTGATTAATT
*** * * * * ** * ** * *
11136 AACAATAAAAATGAAATATTTGGATTAAAAAATTTGAACTTTTGGTTGA-TTAACAATTAAAATA
65 TGTAATAAAAATGAGATCTTT-AAGTAAAAAA-TTGAACTTTTAATTAATTTGTCAATAAAAATG
11200 AAATCTTTGGATTAAAAAATTGA
128 AAATCTTTGGATTAAAAAATTGA
* * *
11223 ACTTTTGGTTAATTAACAACAAAAATGAGATCTTTGGACTAAAAGATTGAACATTTGATTAATTT
1 ACTTTTGGTTAATTAACAACAAAAATGAAATCTTTAGACTAAAAGATTGAACTTTTGATTAATTT
* *
11288 GTAAATAAAAATGAGATCTTTAAGCTAAAAAATTGGACTTTTAAGTAATTTGT-AA-AAAAGATG
66 GT-AATAAAAATGAGATCTTTAAG-TAAAAAATTGAACTTTTAATTAATTTGTCAATAAAA-ATG
* * *
11351 TAACCTTT-GAGTAAAAAATTGA
128 AAATCTTTGGATTAAAAAATTGA
* * * * *
11373 ACTTTTAAG-TAATTTGTAA-ATA-AAAAATGAAACCATTA-AGCTAAAAGATTGAACTTTTAAG
1 ACTTTT-GGTTAA--T-TAACA-ACAAAAATGAAATCTTTAGA-CTAAAAGATTGAACTTTTGAT
* * * * *
11434 TAATTTGTAAATAAAGATGTA-ACCTTTAAGTAAAAGATTGAACTTTTAAATAATTTGTAAATCA
60 TAATTTGT-AATAAAAATG-AGATCTTTAAGTAAAAAATTGAACTTTTAATTAATTTGTCAAT-A
* * *
11498 AAAATGTAATCTTT-GAGTAAAAGATTGA
122 AAAATGAAATCTTTGGATTAAAAAATTGA
* ** ** * * * * * * *
11526 GCCTTTAAG-TAATTTGTCAATAAAAATGAGATC-TTCGAAATAAAAGATGGAGCTTTTGGTTAA
1 -ACTTTTGGTTAA-TTAACAACAAAAATGAAATCTTTAG-ACTAAAAGATTGAACTTTTGATTAA
* * ** * * * * *
11589 TTTATAATAAAAATGAAATCTTTGGGGTTAAAAGATTGAACATTCAAGTAATTTGT-ATATGAAA
63 TTTGTAATAAAAATGAGATCTTT-AAG-TAAAAAATTGAACTTTTAATTAATTTGTCA-ATAAAA
* * *
11653 ATGAAATCTTT-AACTAAAAGATTGA
125 ATGAAATCTTTGGATTAAAAAATTGA
** * * * *
11678 A-TTTT--TT-ATT-------AAGTTGAGATCCTTAAACTAAAAGATTGAACTTTTGATTAAATT
1 ACTTTTGGTTAATTAACAACAAAAATGAAATCTTTAGACTAAAAGATTGAACTTTTGATTAATTT
* * ** * *
11732 GTAACAAAAATGAAATCTTTAAAGTAAAAGGTCGAGCTTTTAATTAATTTG
66 GTAATAAAAATGAGATCTTT-AAGTAAAAAATTGAACTTTTAATTAATTTG
11783 AAAAAAAATG
Statistics
Matches: 566, Mismatches: 116, Indels: 73
0.75 0.15 0.10
Matches are distributed among these distances:
139 21 0.04
140 51 0.09
141 2 0.00
147 2 0.00
148 1 0.00
149 1 0.00
150 29 0.05
151 87 0.15
152 235 0.42
153 115 0.20
154 22 0.04
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (150 bp):
ACTTTTGGTTAATTAACAACAAAAATGAAATCTTTAGACTAAAAGATTGAACTTTTGATTAATTT
GTAATAAAAATGAGATCTTTAAGTAAAAAATTGAACTTTTAATTAATTTGTCAATAAAAATGAAA
TCTTTGGATTAAAAAATTGA
Found at i:11126 original size:21 final size:21
Alignment explanation
Indices: 11051--11126 Score: 53
Period size: 23 Copynumber: 3.2 Consensus size: 21
11041 AAAATGAAAT
*
11051 CTTTGGATTAAAAAATTTGAA
1 CTTTGGATTAAAAAAATTGAA
*
11072 CTTTTGGTTGATTAACAATAAAAATGAA
1 C-TTT-G--GATT-A-AA-AAAATTGAA
11100 ATCTTTGGATTAAAAAAATTGAA
1 --CTTTGGATTAAAAAAATTGAA
11123 CTTT
1 CTTT
11127 TGGTTGATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 18
0.67 0.05 0.28
Matches are distributed among these distances:
21 5 0.12
22 3 0.07
23 9 0.21
24 2 0.05
25 5 0.12
26 5 0.12
27 2 0.05
28 8 0.19
29 3 0.07
30 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (21 bp):
CTTTGGATTAAAAAAATTGAA
Found at i:11305 original size:51 final size:50
Alignment explanation
Indices: 10892--11689 Score: 470
Period size: 51 Copynumber: 15.8 Consensus size: 50
10882 TTATAAAAAC
* * * ** *
10892 AATGTAATCTTTCAACTAAAAGA-TGAGACTTTTGGTTAATTAAT-AACAAA
1 AATGAAATCTTT-GACTAAAAGATTGA-ACTTTTGATTAATTTGTAAATAAA
* * * * *
10942 AATGAAATCTTTAAGCTAAAAGA-TGAAATTTTTGACTAATTTGTGAATTAA
1 AATGAAATCTTTGA-CTAAAAGATTG-AACTTTTGATTAATTTGTAAATAAA
* * * ** *
10993 AATGAGATCTTTAAGTAAAAGATTGAAAATTTGATTAATTTGTCAATAAA
1 AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * * * *
11043 AATGAAATCTTTGGATTAAAAAATTTGAACTTTTGGTTGA-TT-AACAATAAA
1 AATGAAATCTTT-GACTAAAAGA-TTGAACTTTTGATTAATTTGTA-AATAAA
* * * * *
11094 AATGAAATCTTTGGATTAAAAAAATTGAACTTTTGGTTGA-TT-AACAATAAA
1 AATGAAATCTTT-GACT-AAAAGATTGAACTTTTGATTAATTTGTA-AATAAA
* * * * * * *
11145 AATGAAATATTTGGATTAAAAAATTTGAACTTTTGGTTGA-TT-AACAATTAA
1 AATGAAATCTTT-GACTAAAAGA-TTGAACTTTTGATTAATTTGTA-AATAAA
* * * * * *
11196 AATAAAATCTTTGGATTAAAAAATTGAACTTTTGGTTAA-TT-AACAACAAA
1 AATGAAATCTTT-GACTAAAAGATTGAACTTTTGATTAATTTGTA-AATAAA
* *
11246 AATGAGATCTTTGGACTAAAAGATTGAACATTTGATTAATTTGTAAATAAA
1 AATGAAATCTTT-GACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * * * * *
11297 AATGAGATCTTTAAGCTAAAAAATTGGACTTTTAAGTAATTTGTAAA-AAA
1 AATGAAATCTTTGA-CTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * * * * * *
11347 GATGTAACCTTTGAGTAAAAAATTGAACTTTTAAGTAATTTGTAAATAAAA
1 AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAATTTGTAAAT-AAA
* * * * *
11398 AATGAAACCATTAAGCTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAA
1 AATGAAATCTTTGA-CTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * * * * * *
11449 GATGTAACCTTTAAGTAAAAGATTGAACTTTTAAATAATTTGTAAATCAAA
1 AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAATTTGTAAAT-AAA
* * * * * * *
11500 AATGTAATCTTTGAGTAAAAGATTGAGCCTTTAAGTAATTTGTCAATAAA
1 AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * * * * * *
11550 AATGAGATCTTCGAAATAAAAGATGGAGCTTTTGGTTAATTTAT-AATAAA
1 AATGAAATCTTTG-ACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
** * ** * * *
11600 AATGAAATCTTTGGGGTTAAAAGATTGAACATTCAAGTAATTTGTATATGAA
1 AATGAAATCTTT--GACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
* * *
11652 AATGAAATCTTTAACTAAAAGATTGAATTTTTTATTAA
1 AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAA
11690 GTTGAGATCC
Statistics
Matches: 625, Mismatches: 103, Indels: 40
0.81 0.13 0.05
Matches are distributed among these distances:
49 32 0.05
50 225 0.36
51 301 0.48
52 67 0.11
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (50 bp):
AATGAAATCTTTGACTAAAAGATTGAACTTTTGATTAATTTGTAAATAAA
Found at i:12345 original size:41 final size:41
Alignment explanation
Indices: 12296--12408 Score: 172
Period size: 41 Copynumber: 2.8 Consensus size: 41
12286 TCTTTCCTGT
* ** *
12296 TTTGCCCTTCCCGGTCGAAAGGTGTTGTTTATTTTTCCTAA
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTACCTTTCCCAA
*
12337 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTACCTTTCCCAG
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTACCTTTCCCAA
*
12378 TTTGCCCTTCCCAGTCGGAAGGTGTTGTTTA
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTA
12409 AATTTGTCTT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.12, C:0.25, G:0.23, T:0.40
Consensus pattern (41 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTACCTTTCCCAA
Found at i:12581 original size:97 final size:98
Alignment explanation
Indices: 12370--12914 Score: 700
Period size: 97 Copynumber: 5.6 Consensus size: 98
12360 GTTGTTTACC
** *
12370 TTTCCCAGTTTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTTTTT-CCAAATTGCCCT
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCCCAAATTGCCCT
* *
12434 TCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTT
66 TCCCAGTCGAAAGGTGTTGTTTAAGTTTGTCTT
* *
12467 TTTCCCAAATTCCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTATTTCCCAAATTGCCCT
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCCCAAATTGCCCT
* *
12532 TCCAAGTCGAAAGGTGTTGTTTAAGTTTCTCTT
66 TCCCAGTCGAAAGGTGTTGTTTAAGTTTGTCTT
* *
12565 TTTCCCAAATTG-CCTTCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTTTTTCACAAATTGCCCT
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCCCAAATTGCCCT
* * * **
12629 TCCGAGTCGGAAGGTGTTTTTTTGTGTTTGTCTT
66 TCCCAGTCGAAAGGTG-TTGTTTAAGTTTGTCTT
* * * * * *
12663 TTTCCCAATTTGCCCTTCCTAATCGGAAGGTTTTGTTTAAAGTTTTTCTCTTTTTCCCGAATCGC
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAA---TTTGTCTTTTTCCCAAATTGC
*
12728 CCTTCCCATTCGAAAGGTGTTGTTTAAG-TTGTCTT
63 CCTTCCCAGTCGAAAGGTGTTGTTTAAGTTTGTCTT
* * * *
12763 TTTCCAAAATTGCCCTTCCCAATCAGAAGGTGTTGTTTAAGTTTCTCTTTTTCCCAAATTGCCCT
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCCCAAATTGCCCT
*
12828 TCCCAGTCGTAAGGTGTTGTTTAAGTTTGTCTT
66 TCCCAGTCGAAAGGTGTTGTTTAAGTTTGTCTT
**** ** * * *
12861 TTTCCTGTTTTGCCCTTCCCGGTCGGAAGGTGTTGTTTAAGTCTCTCTTTTTCC
1 TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCC
12915 TGAATCTAGA
Statistics
Matches: 390, Mismatches: 51, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
97 155 0.40
98 129 0.33
99 25 0.06
100 42 0.11
101 6 0.02
102 33 0.08
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (98 bp):
TTTCCCAAATTGCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTTTTTCCCAAATTGCCCT
TCCCAGTCGAAAGGTGTTGTTTAAGTTTGTCTT
Found at i:12916 original size:49 final size:49
Alignment explanation
Indices: 12370--12914 Score: 691
Period size: 49 Copynumber: 11.1 Consensus size: 49
12360 GTTGTTTACC
** *
12370 TTTCCCAGTTTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
*
12419 TTT-CCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
* * * *
12467 TTTCCCAAATTCCCCTTCCCAATCGGAAGGTGTTGTTTAAATTTGTCTA
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
* * *
12516 TTTCCCAAATTGCCCTTCCAAGTCGAAAGGTGTTGTTTAAGTTTCTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
*
12565 TTTCCCAAATTG-CCTTCCCAGTCGGAAGGTGTTGTTTAAATTTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
* * * **
12613 TTTCACAAATTGCCCTTCCGAGTCGGAAGGTGTTTTTTTGTGTTTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTG-TTGTTTAAGTTTGTCTT
* * * * *
12663 TTTCCCAATTTGCCCTTCCTAATCGGAAGGTTTTGTTTAAAGTTTTTCTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTT-AAG--TTTGTCTT
* * * *
12715 TTTCCCGAATCGCCCTTCCCATTCGAAAGGTGTTGTTTAAG-TTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
* * * *
12763 TTTCCAAAATTGCCCTTCCCAATCAGAAGGTGTTGTTTAAGTTTCTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
*
12812 TTTCCCAAATTGCCCTTCCCAGTCGTAAGGTGTTGTTTAAGTTTGTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
**** * * *
12861 TTTCCTGTTTTGCCCTTCCCGGTCGGAAGGTGTTGTTTAAGTCTCTCTT
1 TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
12910 TTTCC
1 TTTCC
12915 TGAATCTAGA
Statistics
Matches: 430, Mismatches: 59, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
48 130 0.30
49 218 0.51
50 41 0.10
51 3 0.01
52 38 0.09
ACGTcount: A:0.17, C:0.22, G:0.18, T:0.43
Consensus pattern (49 bp):
TTTCCCAAATTGCCCTTCCCAGTCGGAAGGTGTTGTTTAAGTTTGTCTT
Found at i:23883 original size:17 final size:17
Alignment explanation
Indices: 23861--23896 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
23851 AGTTGAAGGG
23861 CAAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAAA
*
23878 CAAAAAACAAAAAAAAA
1 CAAAAAAAAAAAAAAAA
23895 CA
1 CA
23897 CTCAGCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
CAAAAAAAAAAAAAAAA
Found at i:27239 original size:50 final size:50
Alignment explanation
Indices: 27185--27703 Score: 410
Period size: 50 Copynumber: 10.3 Consensus size: 50
27175 AACTTTGAGA
* * *
27185 AATTTGTGAATAAAGGTTGGATTTTTAA-TCAAAGATTGGAACTTTTAATC
1 AATTTGTGAATAAAGGTTGGACTTTTAATTAAAAGATT-GAACTTTTAAGC
* * *
27235 AATTTGTGAATAAAGATTGGA-TCTTTAATTCAAAGAGTGAACTTTTAAGC
1 AATTTGTGAATAAAGGTTGGACT-TTTAATTAAAAGATTGAACTTTTAAGC
* * *
27285 AATTTGTGAATAAAGATTGGA-TCTTTAATTAAAAGAGTGAACTTTTAAGA
1 AATTTGTGAATAAAGGTTGGACT-TTTAATTAAAAGATTGAACTTTTAAGC
* * * * ** *
27335 AATTTGT-AAGTGAAGTTTGAACTTTTAGTTAAAAGAGGGAACCTTTAAGC
1 AATTTGTGAA-TAAAGGTTGGACTTTTAATTAAAAGATTGAACTTTTAAGC
* * * *
27385 AATTTGTAAATAAAAG-TGGAACTTTTAATTAAAAGATTGAACTTTTGAGA
1 AATTTGTGAATAAAGGTTGG-ACTTTTAATTAAAAGATTGAACTTTTAAGC
* * *
27435 AATTTGTGAATAAAAGTTGGACTTTTAATTAAAAGATTGAAGCTTGTAAGT
1 AATTTGTGAATAAAGGTTGGACTTTTAATTAAAAGATTGAA-CTTTTAAGC
* * * * * * ** *
27486 AGTTTGTAAATAATGATTGGA-GTTTAGATTAAAAGGTCAAACTTTTAAGA
1 AATTTGTGAATAAAGGTTGGACTTTTA-ATTAAAAGATTGAACTTTTAAGC
* * * * * *
27536 AATTTGTAAATAAAGGTTGAAATTTTAATTAAAAGGTTGAACTCTTAAGA
1 AATTTGTGAATAAAGGTTGGACTTTTAATTAAAAGATTGAACTTTTAAGC
* * *
27586 AATTTGT-ATGTGAAGGTTGAACTTTTAATTGAAAAG-TTGAAACCTTTTAAGC
1 AATTTGTGA-ATAAAGGTTGGACTTTTAATT-AAAAGATTG-AA-CTTTTAAGC
* * * * * *
27638 AATTTGTAAATAAA-GATGAAATCTTTAAGTTAAAATATTGAAC-TTTAAAC
1 AATTTGTGAATAAAGGTTGGACT-TTTAA-TTAAAAGATTGAACTTTTAAGC
*
27688 TAATTTGTAAATAAAG
1 -AATTTGTGAATAAAG
27704 ACAAATTTTT
Statistics
Matches: 393, Mismatches: 56, Indels: 38
0.81 0.11 0.08
Matches are distributed among these distances:
49 6 0.02
50 274 0.70
51 79 0.20
52 28 0.07
53 6 0.02
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.37
Consensus pattern (50 bp):
AATTTGTGAATAAAGGTTGGACTTTTAATTAAAAGATTGAACTTTTAAGC
Found at i:27289 original size:100 final size:100
Alignment explanation
Indices: 27101--27703 Score: 440
Period size: 100 Copynumber: 6.0 Consensus size: 100
27091 GAGTTAAAAA
* ** * * *
27101 TTGGATTTTTAATTAAAAG-TTCAAACTTTTAAGAAATTTAAGAATAAAGATTGAATTTTTAGGT
1 TTGGATTTTTAATTAAAAGATT-GAACTTTTAAGAAATTTGTGAATAAAGATTGGACTTTTA-AT
** ** * * *
27165 GGAAA-TTTGAAAC-TTTGAGAAATTTGTGAATAAAGG
64 TAAAAGAGTG-AACTTTTAAGCAATTTGTAAATAAAGG
* **
27201 TTGGATTTTTAA-TCAAAGATTGGAACTTTTAATCAATTTGTGAATAAAGATTGGA-TCTTTAAT
1 TTGGATTTTTAATTAAAAGATT-GAACTTTTAAGAAATTTGTGAATAAAGATTGGACT-TTTAAT
* * *
27264 TCAAAGAGTGAACTTTTAAGCAATTTGTGAATAAAGA
64 TAAAAGAGTGAACTTTTAAGCAATTTGTAAATAAAGG
* * * * * *
27301 TTGGATCTTTAATTAAAAGAGTGAACTTTTAAGAAATTTGT-AAGTGAAGTTTGAACTTTTAGTT
1 TTGGATTTTTAATTAAAAGATTGAACTTTTAAGAAATTTGTGAA-TAAAGATTGGACTTTTAATT
* * *
27365 AAAAGAGGGAACCTTTAAGCAATTTGTAAATAAAAG
65 AAAAGAGTGAACTTTTAAGCAATTTGTAAATAAAGG
* *
27401 -TGGAACTTTTAATTAAAAGATTGAACTTTTGAGAAATTTGTGAATAAA-AGTTGGACTTTTAAT
1 TTGG-ATTTTTAATTAAAAGATTGAACTTTTAAGAAATTTGTGAATAAAGA-TTGGACTTTTAAT
* * * * * *
27464 TAAAAGATTGAAGCTTGTAAGTAGTTTGTAAATAATGA
64 TAAAAGAGTGAA-CTTTTAAGCAATTTGTAAATAAAGG
* * ** * * * *
27502 TTGGA-GTTTAGATTAAAAGGTCAAACTTTTAAGAAATTTGTAAATAAAGGTTGAAATTTTAATT
1 TTGGATTTTTA-ATTAAAAGATTGAACTTTTAAGAAATTTGTGAATAAAGATTGGACTTTTAATT
* * ** *
27566 AAAAG-GTTGAACTCTTAAGAAATTTGTATGTGAAGG
65 AAAAGAG-TGAACTTTTAAGCAATTTGTAAATAAAGG
* * * * * *
27602 TTGAACTTTTAATTGAAAAG-TTGAAACCTTTTAAGCAATTTGTAAATAAAGA-TGAAATCTTTA
1 TTGGATTTTTAATT-AAAAGATTG-AA-CTTTTAAGAAATTTGTGAATAAAGATTGGACT-TTTA
* * *
27665 AGTTAAAATATTGAAC-TTTAAACTAATTTGTAAATAAAG
62 A-TTAAAAGAGTGAACTTTTAAGC-AATTTGTAAATAAAG
27704 ACAAATTTTT
Statistics
Matches: 399, Mismatches: 81, Indels: 43
0.76 0.15 0.08
Matches are distributed among these distances:
99 18 0.05
100 224 0.56
101 99 0.25
102 35 0.09
103 23 0.06
ACGTcount: A:0.40, C:0.05, G:0.17, T:0.37
Consensus pattern (100 bp):
TTGGATTTTTAATTAAAAGATTGAACTTTTAAGAAATTTGTGAATAAAGATTGGACTTTTAATTA
AAAGAGTGAACTTTTAAGCAATTTGTAAATAAAGG
Found at i:27544 original size:201 final size:201
Alignment explanation
Indices: 27095--27704 Score: 550
Period size: 200 Copynumber: 3.0 Consensus size: 201
27085 GCCTTTGAGT
* * * * * *
27095 TAAAAATTGGATTTTTAATTAAAAG-TTCAAACTTTTAAGAAATTT-AAGAATAAAGATTGAATT
1 TAAAGATTGGATCTTTAATTAAAAGAGT-AAACTTTTAAGAAATTTGTA-AATAAAGGTTGAAAT
* ** ** * * * * *
27158 TTTAGGTGGAAATTTGAAACT-TTGAGAAATTTGTGAATAAAGGTTGG-ATTTTTAA-TCAAAGA
64 TTTA-ATTAAAAGGTGGAACTCTTAAGAAATTTGTAAATAAAGG-TGGAACTTTTAATTAAAAGA
* * *
27220 TTGGAACTTTTAATCAATTTGTGAAT-AAAGATTGGATCTTTAATTCAAAGAGTGAACTTTTAAG
127 TT-GAACTTTTAAGCAATTTGTGAATAAAAGATTGGATCTTTAATTAAAAGAGTGAACTTGTAAG
*
27284 CAATTTGTGAA
191 CAATTTGTAAA
* * * * *
27295 TAAAGATTGGATCTTTAATTAAAAGAGTGAACTTTTAAGAAATTTGTAAGTGAAGTTTGAACTTT
1 TAAAGATTGGATCTTTAATTAAAAGAGTAAACTTTTAAGAAATTTGTAAATAAAGGTTGAAATTT
* * *
27360 TAGTTAAAAGAG-GGAAC-CTTTAAGCAATTTGTAAATAAAAGTGGAACTTTTAATTAAAAGATT
66 TAATTAAAAG-GTGGAACTC-TTAAGAAATTTGTAAATAAAGGTGGAACTTTTAATTAAAAGATT
* * * *
27423 GAACTTTTGAGAAATTTGTGAATAAAAG-TTGGA-CTTTTAATTAAAAGATTGAAGCTTGTAAGT
129 GAACTTTTAAGCAATTTGTGAATAAAAGATTGGATC-TTTAATTAAAAGAGTGAA-CTTGTAAGC
*
27486 AGTTTGTAAA
192 AATTTGTAAA
* *
27496 TAATGATTGGA-GTTTAGATTAAAAG-GTCAAACTTTTAAGAAATTTGTAAATAAAGGTTGAAAT
1 TAAAGATTGGATCTTTA-ATTAAAAGAGT-AAACTTTTAAGAAATTTGTAAATAAAGGTTGAAAT
* ** * *
27559 TTTAATTAAAAGGTTGAACTCTTAAGAAATTTGTATGTGAAGGTTGAACTTTTAATTGAAAAG-T
64 TTTAATTAAAAGGTGGAACTCTTAAGAAATTTGTAAATAAAGGTGGAACTTTTAATT-AAAAGAT
* * * *
27623 TGAAACCTTTTAAGCAATTTGTAAAT-AAAGA-TGAAATCTTTAAGTTAAAATATTGAACTT-TA
128 TG-AA-CTTTTAAGCAATTTGTGAATAAAAGATTG-GATCTTTAA-TTAAAAGAGTGAACTTGTA
*
27685 AACTAATTTGTAAA
189 AGC-AATTTGTAAA
27699 TAAAGA
1 TAAAGA
27705 CAAATTTTTG
Statistics
Matches: 335, Mismatches: 53, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
199 13 0.04
200 127 0.38
201 125 0.37
202 17 0.05
203 40 0.12
204 13 0.04
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (201 bp):
TAAAGATTGGATCTTTAATTAAAAGAGTAAACTTTTAAGAAATTTGTAAATAAAGGTTGAAATTT
TAATTAAAAGGTGGAACTCTTAAGAAATTTGTAAATAAAGGTGGAACTTTTAATTAAAAGATTGA
ACTTTTAAGCAATTTGTGAATAAAAGATTGGATCTTTAATTAAAAGAGTGAACTTGTAAGCAATT
TGTAAA
Found at i:27559 original size:20 final size:20
Alignment explanation
Indices: 27534--27576 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
27524 AAACTTTTAA
27534 GAAATTTGTAAAT-AAAGGTT
1 GAAATTT-TAAATAAAAGGTT
*
27554 GAAATTTTAATTAAAAGGTT
1 GAAATTTTAAATAAAAGGTT
27574 GAA
1 GAA
27577 CTCTTAAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.35
Consensus pattern (20 bp):
GAAATTTTAAATAAAAGGTT
Found at i:28480 original size:46 final size:45
Alignment explanation
Indices: 28314--29067 Score: 599
Period size: 43 Copynumber: 16.9 Consensus size: 45
28304 CATTGTTTTA
* ** *
28314 TTCCAAAAATGCCCCTTCCCAGTCGGAAGGTC-CTTTTTTCTTTCT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCT-T
* * * *
28359 TTCCAAAAATAATACCCTTTCCCGGTTGGAAGGTCACAGTTTTCTTTCT
1 TTCC--AAA-AATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCT-T
* *
28408 TTCCAAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGCTTTCTCTT
1 TTCC-AAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
**
28454 ATTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAACTTTCTCTT
1 -TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
* * *
28500 ATTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAACTTTCTGTCAT
1 -TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCAC-AGTTT-TCTCTT
*
28548 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGCTTATTGTC-T
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAG-TT-TTCTCTT
* * * * * *
28594 TTCCAAAAATGCCTCTTCCTGGTTGGGAAGGTCCCTG-TTT-TCAT
1 TTCCAAAAATGCCCCTTCCCGG-TCGGAAGGTCACAGTTTTCTCTT
* * * *
28638 TTCCAAAAATGCCCCTTCCCAGTCAGAAGGTC-C--TTGTTTTCAT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTT-TTCTCTT
*
28681 TTCCAAAAATTCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTC-T
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
** * * *
28725 TTCCAAAAATGCCCCTTCCCAATCGGAAGGTC-C-TTTTTTTCAT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
*
28768 TTCCAAAAATGCCCCTTCCCGGTCAGAAGGTCACAGTTTTCTCTCT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCT-T
* * * *
28814 TTCCAAAAATGCCCCTTCCTGGTTGGAAGGT--C-TTTATTGTCTT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTT-TTCTCTT
* * * * *
28857 TT-CAAAAATGTCCCTTCCTGGTTGGAAGGTCCCTGTTTTCTC-T
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
* * * * *
28900 TTCC-AAAATGCCCCTGCCTGGTTGCG-AGGT--C-TTTATTGTCTT
1 TTCCAAAAATGCCCCTTCCCGGTCG-GAAGGTCACAGTT-TTCTCTT
** * *
28942 TT-CAAAAATGCCCCTTCCTAGTCGGAAGGTC-C--TTGTTTTCAT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTT-TTCTCTT
* * * * * *
28984 TTCCAAAAATACCACTTCCCAGTCGGATGGTC-CGAG-ATT-TCAT
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCAC-AGTTTTCTCTT
* * *
29027 TTCCAAAAATGCCCCATCCTGGTCGGAAGGTCCCAGTTTTC
1 TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTC
29068 CTTCGTTAAT
Statistics
Matches: 596, Mismatches: 74, Indels: 78
0.80 0.10 0.10
Matches are distributed among these distances:
40 2 0.00
41 8 0.01
42 69 0.12
43 163 0.27
44 72 0.12
45 17 0.03
46 128 0.21
47 92 0.15
48 30 0.05
49 15 0.03
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (45 bp):
TTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTT
Found at i:28738 original size:87 final size:86
Alignment explanation
Indices: 28314--29067 Score: 660
Period size: 87 Copynumber: 8.5 Consensus size: 86
28304 CATTGTTTTA
** ** * *
28314 TTCCAAAAATGCCCCTTCCCAGTCGGAAGGTC-CTTTTTTCTTTCTTTCCAAAAATAATACCCTT
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTC--TCTTTCC--AAA-AATGCCCCT
* *
28378 TCCCGGTTGGAAGGTCACAGTTTTCTTTCT
61 TCCCGGTCGGAAGGTC-C--TTAT-TTTCT
*
28408 TTCCAAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGCTTTCTCTTATTCCAAAAATGCCCCTTC
1 TTCC-AAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTCTC-T-TTCCAAAAATGCCCCTTC
*
28473 CCGGTCGGAAGGTCAC-AACTTTCTCTT
63 CCGGTCGGAAGGTC-CTTA-TTT-TC-T
* * *
28500 ATTCCAAAAATGCCCCTTCCCGGTCGGAAGGTCACAACTTTCTGTCATTTCCAAAAATGCCCCTT
1 -TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCAC-AGTTT-TCTC-TTTCCAAAAATGCCCCTT
*
28565 CCCGGTCGGAAGGTCACAGCTTATTGTCT
62 CCCGGTCGGAAGGT--C--CTTATTTTCT
* * * * *
28594 TTCCAAAAATGCCTCTTCCTGGTTGGGAAGGTCCCTGTTTTC-ATTTCCAAAAATGCCCCTTCCC
1 TTCCAAAAATGCCCCTTCCTGG-TCGGAAGGTCACAGTTTTCTCTTTCCAAAAATGCCCCTTCCC
* * *
28658 AGTCAGAAGGTCCTTGTTTTCAT
65 GGTCGGAAGGTCCTTATTTTC-T
* * *
28681 TTCCAAAAATTCCCCTTCCCGGTCGGAAGGTCACAGTTTTCTCTTTCCAAAAATGCCCCTTCCCA
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTCTCTTTCCAAAAATGCCCCTTCCCG
* *
28746 ATCGGAAGGTCCTTTTTTTCAT
66 GTCGGAAGGTCCTTATTTTC-T
* *
28768 TTCCAAAAATGCCCCTTCCCGGTCAGAAGGTCACAGTTTTCTCTCTTTCCAAAAATGCCCCTTCC
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAG-TTT-TCTCTTTCCAAAAATGCCCCTTCC
* * * *
28833 TGGTTGGAAGGTCTTTATTGTCT
64 CGGTCGGAAGGTCCTTATTTTCT
* * * * * * *
28856 TTTCAAAAATGTCCCTTCCTGGTTGGAAGGTCCCTGTTTTCTCTTTCC-AAAATGCCCCTGCCTG
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTCTCTTTCCAAAAATGCCCCTTCCCG
* * *
28920 GTTGCG-AGGTCTTTATTGTCT
66 GTCG-GAAGGTCCTTATTTTCT
* * * * * *
28941 TTTCAAAAATGCCCCTTCCTAGTCGGAAGGTC-CTTGTTTTC-ATTTCCAAAAATACCACTTCCC
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCAC-AGTTTTCTCTTTCCAAAAATGCCCCTTCCC
* * * *
29004 AGTCGGATGGTCC-GAGATTTCAT
65 GGTCGGAAGGTCCTTA-TTTTC-T
* *
29027 TTCCAAAAATGCCCCATCCTGGTCGGAAGGTCCCAGTTTTC
1 TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTC
29068 CTTCGTTAAT
Statistics
Matches: 558, Mismatches: 76, Indels: 60
0.80 0.11 0.09
Matches are distributed among these distances:
84 8 0.01
85 91 0.16
86 69 0.12
87 99 0.18
88 34 0.06
89 39 0.07
90 32 0.06
91 3 0.01
92 31 0.06
93 85 0.15
94 24 0.04
95 30 0.05
96 12 0.02
97 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (86 bp):
TTCCAAAAATGCCCCTTCCTGGTCGGAAGGTCACAGTTTTCTCTTTCCAAAAATGCCCCTTCCCG
GTCGGAAGGTCCTTATTTTCT
Found at i:28872 original size:42 final size:42
Alignment explanation
Indices: 28413--28972 Score: 250
Period size: 46 Copynumber: 12.7 Consensus size: 42
28403 TTTCTTTCCA
* ** *
28413 AAAAATGCCCCTTCCTGGTCGGAAGGTC-ACAGCTTTCTCTTATTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTA---TTGTCTT-TT-C
* * *** *
28459 AAAAATGCCCCTTCCCGGTCGGAAGGTCACAACTTTCTCTTATTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTA--TTGTCTT-TT-C
* * * *
28505 AAAAATGCCCCTTCCCGGTCGGAAGGTCACAACTTT-CTGTCATTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGT-----CTTTATTGTC-TTTTC
* * * *
28552 AAAAATGCCCCTTCCCGGTCGGAAGGTCACAGCTTATTGTCTTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGT--C--TTTATTGTCTTTTC
* ** * * *
28598 AAAAATGCCTCTTCCTGGTTGGGAAGGTCCCTGTTTTCATTTCC
1 AAAAATGCCCCTTCCTGGTT-GGAAGGTCTTTATTGTC-TTTTC
** ** * * * *
28642 AAAAATGCCCCTTCCCAGTCAGAAGGTCCTTGTTTTCATTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTATTGTC-TTTTC
* * * * * *
28685 AAAAATTCCCCTTCCCGGTCGGAAGGTCACAGTT-TTCTCTTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGT--C-TTTATTGTCTTTTC
*** * * *
28729 AAAAATGCCCCTTCCCAATCGGAAGGTCCTTT-TTTTCATTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGT-CTTTATTGTC-TTTTC
* ** * *
28772 AAAAATGCCCCTTCCCGGTCAGAAGGTCACAGTTT-TCTCTCTTTCC
1 AAAAATGCCCCTTCCTGGTTGGAAGGT--C--TTTAT-TGTCTTTTC
28818 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTATTGTCTTTTC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTATTGTCTTTTC
* ** * *
28860 AAAAATGTCCCTTCCTGGTTGGAAGGTCCCTGTTTTCTCTTTC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTATTGTCT-TTTC
* *
28903 CAAAATGCCCCTGCCTGGTTGCG-AGGTCTTTATTGTCTTTTC
1 AAAAATGCCCCTTCCTGGTTG-GAAGGTCTTTATTGTCTTTTC
* *
28945 AAAAATGCCCCTTCCTAGTCGGAAGGTC
1 AAAAATGCCCCTTCCTGGTTGGAAGGTC
28973 CTTGTTTTCA
Statistics
Matches: 429, Mismatches: 61, Indels: 52
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.00
42 75 0.17
43 115 0.27
44 55 0.13
45 6 0.01
46 127 0.30
47 43 0.10
48 4 0.01
49 2 0.00
51 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (42 bp):
AAAAATGCCCCTTCCTGGTTGGAAGGTCTTTATTGTCTTTTC
Found at i:29188 original size:48 final size:48
Alignment explanation
Indices: 29125--29409 Score: 364
Period size: 48 Copynumber: 5.9 Consensus size: 48
29115 AAATTCCCAG
* *
29125 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATAGTTCATTCCTGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
* * *
29173 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATATTTTATTCCCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
* *
29221 TTTGCCCTTCCCGGTCGGGAGGTTTTGTTTTCAA-AGTTTTCATT-CTCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAG--TTCATTCCT-GT
* *
29270 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAAT-GTTTCATTCCCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAG-TTCATTCCTGT
* *
29318 TTTGCCCTTCCCGGTCGGAAGG-GTTTGTCTTCAATATTTCATTCCTGT
1 TTTGCCCTTCCCGGTCGGAAGGTG-TTGTTTTCAATAGTTCATTCCTGT
* *
29366 TTTGCCCTTCTCGGTCGGAAGGTGTCGTTTTCAATA-TTGCATTC
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTT-CATTC
29410 ATGTCTTCAA
Statistics
Matches: 207, Mismatches: 21, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
47 4 0.02
48 162 0.78
49 41 0.20
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (48 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
Found at i:29290 original size:97 final size:97
Alignment explanation
Indices: 29084--29409 Score: 408
Period size: 97 Copynumber: 3.5 Consensus size: 97
29074 TAATCCCCAG
** *
29084 TTTGCCCTTCCTTATCGGAAGGTGTTGTTTT-AA-A-TTC---CCAG-TTTGCCCTTCCCGGTCG
1 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCG
* *
29142 GAAGGTGTTATCTTCAATAG--TTCATTCCTGT
66 GAAGGTTTTGTCTTCAA-AGTTTTCATTCCTGT
* *
29173 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATATTTTATTCCCGTTTTGCCCTTCCCGGTCG
1 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCG
* *
29238 GGAGGTTTTGTTTTCAAAGTTTTCATT-CTCGT
66 GAAGGTTTTGTCTTCAAAGTTTTCATTCCT-GT
*
29270 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGGTCG
1 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCG
*
29335 GAAGGGTTTGTCTTC-AA-TATTTCATTCCTGT
66 GAAGGTTTTGTCTTCAAAGT-TTTCATTCCTGT
* *
29366 TTTGCCCTT-CTCGGTCGGAAGGTGTCGTTTTCAATATTGCATTC
1 TTTGCCCTTCCT-GGTCGGAAGGTGTTGTTTTCAATATTTCATTC
29410 ATGTCTTCAA
Statistics
Matches: 206, Mismatches: 18, Indels: 19
0.85 0.07 0.08
Matches are distributed among these distances:
89 28 0.14
90 2 0.01
91 1 0.00
92 2 0.01
95 8 0.04
96 81 0.39
97 84 0.41
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.42
Consensus pattern (97 bp):
TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCG
GAAGGTTTTGTCTTCAAAGTTTTCATTCCTGT
Found at i:29303 original size:145 final size:145
Alignment explanation
Indices: 29125--29399 Score: 419
Period size: 145 Copynumber: 1.9 Consensus size: 145
29115 AAATTCCCAG
*
29125 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATAG-TTCATTCCTGTTTTGCCCTTCCCGGTC
1 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAAT-GTTTCATTCCCGTTTTGCCCTTCCCGGTC
* * * * *
29189 GGAA-GGTGTTGTTTTCAATATTTTATTCCCGTTTTGCCCTTCCCGGTCGGGAGGTTTTGTTTTC
65 GGAAGGGT-TTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTC
29253 AAAGTTTTCATTCTCGT
129 AAAGTTTTCATTCTCGT
* * *
29270 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGGTCG
1 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGGTCG
* *
29335 GAAGGGTTTGTCTTCAATATTTCATTCCTGTTTTGCCCTTCTCGGTCGGAAGGTGTCGTTTTCAA
66 GAAGGGTTTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTCAA
29400 TATTGCATTC
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
144 1 0.01
145 113 0.97
146 3 0.03
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (145 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGGTCG
GAAGGGTTTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTCAA
AGTTTTCATTCTCGT
Found at i:29737 original size:43 final size:43
Alignment explanation
Indices: 29680--29828 Score: 192
Period size: 43 Copynumber: 3.5 Consensus size: 43
29670 GTTTTCTCTC
* * *
29680 TTTCCAAAAATGCCCCTTCCTGGTTGAAAGGTCTTTATTGTC-
1 TTTCCAAAAATGCCCCTTCCTGGTTGAAAGGTCCTTGTTTTCA
* *
29722 TATTCCAAAAATGCCCCTTCCTGGTTGGAAGGTCCCTGTTTTCA
1 T-TTCCAAAAATGCCCCTTCCTGGTTGAAAGGTCCTTGTTTTCA
* ** **
29766 TTTCCTAAAATGCCCCTTCCCAGTCCAAAGGTCCTTGTTTTCA
1 TTTCCAAAAATGCCCCTTCCTGGTTGAAAGGTCCTTGTTTTCA
29809 TTTCCAAAAATGCCCCTTCC
1 TTTCCAAAAATGCCCCTTCC
29829 AGGTCAGAAG
Statistics
Matches: 92, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.01
43 90 0.98
44 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (43 bp):
TTTCCAAAAATGCCCCTTCCTGGTTGAAAGGTCCTTGTTTTCA
Found at i:29796 original size:86 final size:85
Alignment explanation
Indices: 29646--29854 Score: 231
Period size: 86 Copynumber: 2.4 Consensus size: 85
29636 ACTCCCGAAC
* ** **
29646 CCCCTTCCCGGTCAGAAGGTCACAGTTTTCTCTCTTTCCAAAAATGCCCCTTCCTGGTTGAAAGG
1 CCCCTTCCAGGTCAGAAGGTCACAG--TT-T-TCTTTCCAAAAATGCCCCTTCCCAGTCCAAAGG
*
29711 TCTTTATTGTC-TATTCCAAAAATG
62 TCCTTATTGTCAT-TTCCAAAAATG
* ** * * *
29735 CCCCTTCCTGGTTGGAAGGTCCCTGTTTTCATTTCCTAAAATGCCCCTTCCCAGTCCAAAGGTCC
1 CCCCTTCCAGGTCAGAAGGTCACAGTTTTC-TTTCCAAAAATGCCCCTTCCCAGTCCAAAGGTCC
* *
29800 TTGTTTTCATTTCCAAAAATG
65 TTATTGTCATTTCCAAAAATG
29821 CCCCTTCCAGGTCAGAAGGTCACAGTTTTCTTTC
1 CCCCTTCCAGGTCAGAAGGTCACAGTTTTCTTTC
29855 GTTAATCCCC
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
85 6 0.06
86 71 0.71
87 3 0.03
89 20 0.20
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.34
Consensus pattern (85 bp):
CCCCTTCCAGGTCAGAAGGTCACAGTTTTCTTTCCAAAAATGCCCCTTCCCAGTCCAAAGGTCCT
TATTGTCATTTCCAAAAATG
Found at i:29840 original size:43 final size:42
Alignment explanation
Indices: 29646--29854 Score: 167
Period size: 43 Copynumber: 4.8 Consensus size: 42
29636 ACTCCCGAAC
*
29646 CCCCTTCCCGGTCAGAAGGTCACAGTT-TTCTCTCTTTCCAAAAATG
1 CCCCTTCCAGGTCAGAAGGTC-C--TTGTT-T-TCTTTCCAAAAATG
* * * * *
29692 CCCCTTCCTGGT-TGAAAGGTCTTTATTGTCTATTCCAAAAATG
1 CCCCTTCCAGGTCAG-AAGGTCCTTGTTTTCT-TTCCAAAAATG
* ** * *
29735 CCCCTTCCTGGTTGGAAGGTCCCTGTTTTCATTTCCTAAAATG
1 CCCCTTCCAGGTCAGAAGGTCCTTGTTTTC-TTTCCAAAAATG
29778 CCCCTTCCCA-GTCCA-AAGGTCCTTGTTTTCATTTCCAAAAATG
1 CCCCTT-CCAGGT-CAGAAGGTCCTTGTTTTC-TTTCCAAAAATG
*
29821 CCCCTTCCAGGTCAGAAGGTCAC-AGTTTTCTTTC
1 CCCCTTCCAGGTCAGAAGGTC-CTTGTTTTCTTTC
29855 GTTAATCCCC
Statistics
Matches: 137, Mismatches: 16, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
42 12 0.09
43 100 0.73
44 7 0.05
45 1 0.01
46 17 0.12
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.34
Consensus pattern (42 bp):
CCCCTTCCAGGTCAGAAGGTCCTTGTTTTCTTTCCAAAAATG
Found at i:29971 original size:48 final size:48
Alignment explanation
Indices: 29908--30192 Score: 362
Period size: 48 Copynumber: 5.9 Consensus size: 48
29898 AAATTCCCAA
* *
29908 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATAGTTCATTCCTGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
* * * *
29956 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAGTATTTTATTCCCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
*
30004 TTTGCCCTTCCCGGTCGGGAGGTGTTGTTTTCAA-AGTTTTCATT-CTCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAG--TTCATTCCT-GT
* *
30053 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAAT-GTTTCATTCCCGT
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAG-TTCATTCCTGT
* * *
30101 TTTGCCCTTCCCGATCGGAATGGT-TTGTCTTCAATATTTCATTCCTGT
1 TTTGCCCTTCCCGGTCGGAA-GGTGTTGTTTTCAATAGTTCATTCCTGT
* * *
30149 TTTGCCCTTCTCGGTCGGAAGGTGTCGTTTTCAATATTTCATTC
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTC
30193 ATGTCTTCAA
Statistics
Matches: 206, Mismatches: 23, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
47 4 0.02
48 158 0.77
49 44 0.21
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (48 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTGTTTTCAATAGTTCATTCCTGT
Found at i:30027 original size:96 final size:96
Alignment explanation
Indices: 29908--30192 Score: 414
Period size: 96 Copynumber: 3.0 Consensus size: 96
29898 AAATTCCCAA
*
29908 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATAGTTCATTCCTGTTTTGCCCTTCCCGGTCG
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTCTTCAATAGTTCATTCCTGTTTTGCCCTTCCCGGTCG
* *
29973 GAAGGTGTTGTTTTCAGTATTTTATTCCCGT
66 GAAGGTGTTGTTTTCAATATTTCATTCCCGT
* * *
30004 TTTGCCCTTCCCGGTCGGGAGGTGTTGTTTTCAA-AGTTTTCATT-CTCGTTTTGCCCTTCCTGG
1 TTTGCCCTTCCCGGTCGGAAGGTGTTGTCTTCAATAG--TTCATTCCT-GTTTTGCCCTTCCCGG
*
30067 TCGGAAGGTGTTGTTTTCAATGTTTCATTCCCGT
63 TCGGAAGGTGTTGTTTTCAATATTTCATTCCCGT
* * *
30101 TTTGCCCTTCCCGATCGGAATGGT-TTGTCTTCAATATTTCATTCCTGTTTTGCCCTTCTCGGTC
1 TTTGCCCTTCCCGGTCGGAA-GGTGTTGTCTTCAATAGTTCATTCCTGTTTTGCCCTTCCCGGTC
*
30165 GGAAGGTGTCGTTTTCAATATTTCATTC
65 GGAAGGTGTTGTTTTCAATATTTCATTC
30193 ATGTCTTCAA
Statistics
Matches: 168, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
95 2 0.01
96 81 0.48
97 81 0.48
98 4 0.02
ACGTcount: A:0.12, C:0.24, G:0.21, T:0.43
Consensus pattern (96 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTGTCTTCAATAGTTCATTCCTGTTTTGCCCTTCCCGGTCG
GAAGGTGTTGTTTTCAATATTTCATTCCCGT
Found at i:30078 original size:145 final size:145
Alignment explanation
Indices: 29908--30182 Score: 410
Period size: 145 Copynumber: 1.9 Consensus size: 145
29898 AAATTCCCAA
* *
29908 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATAG-TTCATTCCTGTTTTGCCCTTCCCGGTC
1 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAAT-GTTTCATTCCCGTTTTGCCCTTCCCGATC
* * * * *
29972 GGAA-GGTGTTGTTTTCAGTATTTTATTCCCGTTTTGCCCTTCCCGGTCGGGAGGTGTTGTTTTC
65 GGAATGGT-TTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTC
30036 AAAGTTTTCATTCTCGT
129 AAAGTTTTCATTCTCGT
* * *
30053 TTTGCCCTTCCTGGTCGGAAGGTGTTGTTTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGATCG
1 TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGATCG
* *
30118 GAATGGTTTGTCTTCAATATTTCATTCCTGTTTTGCCCTTCTCGGTCGGAAGGTGTCGTTTTCAA
66 GAATGGTTTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTCAA
30183 TATTTCATTC
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
144 1 0.01
145 112 0.97
146 3 0.03
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (145 bp):
TTTGCCCTTCCCGGTCGGAAGGTGTTATCTTCAATGTTTCATTCCCGTTTTGCCCTTCCCGATCG
GAATGGTTTGTCTTCAATATTTCATTCCCGTTTTGCCCTTCCCGGTCGGAAGGTGTCGTTTTCAA
AGTTTTCATTCTCGT
Found at i:41927 original size:2 final size:2
Alignment explanation
Indices: 41920--41956 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
41910 CCAAATAGGG
41920 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
41957 GTAATATAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:42062 original size:48 final size:48
Alignment explanation
Indices: 42007--42103 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
41997 TCTTTTAAAT
* * *
42007 TGCATTTTCAA-TAGTACATCCATTTTAATTGGTTGGTTTTGCATTGCA
1 TGCATTTT-AATTAGTACAACCATTTTAACTGGTTGGTTTAGCATTGCA
* ** *
42055 TGCATTTTAATTCGTTTAAGCATTTTAACTGGTTGGTTTAGCATTGCA
1 TGCATTTTAATTAGTACAACCATTTTAACTGGTTGGTTTAGCATTGCA
42103 T
1 T
42104 ACATGTTTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 2 0.05
48 39 0.95
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.46
Consensus pattern (48 bp):
TGCATTTTAATTAGTACAACCATTTTAACTGGTTGGTTTAGCATTGCA
Found at i:44077 original size:29 final size:29
Alignment explanation
Indices: 44027--44106 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 29
44017 TTGACACGAG
* * * *
44027 TGCA-AACCCACACTCAAAACAATCCCAAG
1 TGCACAACCCACACT-TAAACAAACACAAA
* *
44056 TGTACAACCCACACTTGAACAAACACAAA
1 TGCACAACCCACACTTAAACAAACACAAA
*
44085 TGCACAACCCGCACTTAAACAA
1 TGCACAACCCACACTTAAACAA
44107 GATCAGAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 31 0.76
30 10 0.24
ACGTcount: A:0.45, C:0.35, G:0.07, T:0.12
Consensus pattern (29 bp):
TGCACAACCCACACTTAAACAAACACAAA
Found at i:51601 original size:18 final size:21
Alignment explanation
Indices: 51578--51615 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
51568 TCATTGCTTT
51578 CTTCTT-TG-TTCTC-TTGTC
1 CTTCTTCTGATTCTCATTGTC
51596 CTTCTTCTGATTCTCATTGT
1 CTTCTTCTGATTCTCATTGT
51616 TTCTCAAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 2 0.12
20 5 0.29
21 4 0.24
ACGTcount: A:0.05, C:0.26, G:0.11, T:0.58
Consensus pattern (21 bp):
CTTCTTCTGATTCTCATTGTC
Found at i:53110 original size:29 final size:29
Alignment explanation
Indices: 53038--53125 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
53028 CAAAGCTTTG
* *
53038 ACACGAGTGCA-AACCCACACTCAAAACAA
1 ACACAAGTGCACAACCCACACT-TAAACAA
* * *
53067 ATCCCAAGTGTACAACCCACACTTGAACAA
1 A-CACAAGTGCACAACCCACACTTAAACAA
* *
53097 ACACAAGTGCACAACTCGCACTTAAACAA
1 ACACAAGTGCACAACCCACACTTAAACAA
53126 TATCAGAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 24 0.51
30 13 0.28
31 10 0.21
ACGTcount: A:0.44, C:0.33, G:0.10, T:0.12
Consensus pattern (29 bp):
ACACAAGTGCACAACCCACACTTAAACAA
Found at i:64622 original size:15 final size:16
Alignment explanation
Indices: 64592--64630 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
64582 TTACTTTGCT
64592 TTGTTTTCTAGTTTAA
1 TTGTTTTCTAGTTTAA
64608 TTGTTTTCT-GTTTAA
1 TTGTTTTCTAGTTTAA
64623 TTGCTTTT
1 TTG-TTTT
64631 TGTCAATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.13, C:0.08, G:0.13, T:0.67
Consensus pattern (16 bp):
TTGTTTTCTAGTTTAA
Found at i:72145 original size:31 final size:30
Alignment explanation
Indices: 72108--72170 Score: 108
Period size: 31 Copynumber: 2.1 Consensus size: 30
72098 GTTTGTTTGT
*
72108 TGTGTGCAGTGTGTAAGGGTTGGTGTGACAG
1 TGTGTGCAGTGTGCAAGGGTTGGTGTG-CAG
72139 TGTGTGCAGTGTGCAAGGGTTGGTGTGCAG
1 TGTGTGCAGTGTGCAAGGGTTGGTGTGCAG
72169 TG
1 TG
72171 ACCTTGCCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.14, C:0.08, G:0.46, T:0.32
Consensus pattern (30 bp):
TGTGTGCAGTGTGCAAGGGTTGGTGTGCAG
Found at i:73303 original size:24 final size:25
Alignment explanation
Indices: 73271--73331 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
73261 GCCATGCCAT
*
73271 ATATCAAAG-AAGAAAGGAAGCACA
1 ATATCAAAGAAAAAAAGGAAGCACA
73295 ATATCAAAGAAAAAAAAGGAAGCACA
1 ATATCAAAG-AAAAAAAGGAAGCACA
73321 ATA--AAAGAAAA
1 ATATCAAAGAAAA
73332 TGGTAACATG
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
23 4 0.12
24 13 0.38
26 17 0.50
ACGTcount: A:0.66, C:0.10, G:0.16, T:0.08
Consensus pattern (25 bp):
ATATCAAAGAAAAAAAGGAAGCACA
Found at i:73312 original size:26 final size:26
Alignment explanation
Indices: 73271--73331 Score: 85
Period size: 24 Copynumber: 2.5 Consensus size: 26
73261 GCCATGCCAT
*
73271 ATATCAAAG--AAGAAAGGAAGCACA
1 ATATCAAAGAAAAAAAAGGAAGCACA
73295 ATATCAAAGAAAAAAAAGGAAGCACA
1 ATATCAAAGAAAAAAAAGGAAGCACA
73321 ATA--AAAGAAAA
1 ATATCAAAGAAAA
73332 TGGTAACATG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 17 0.50
26 17 0.50
ACGTcount: A:0.66, C:0.10, G:0.16, T:0.08
Consensus pattern (26 bp):
ATATCAAAGAAAAAAAAGGAAGCACA
Found at i:77717 original size:51 final size:51
Alignment explanation
Indices: 77615--77724 Score: 120
Period size: 51 Copynumber: 2.2 Consensus size: 51
77605 CGTTCATCAA
***
77615 TTTTTC-CTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCCTTTGGTG
1 TTTTTCTCTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCCTCACGTG
*
77665 TTTTTCTCTTGTTTCA-ATCTTGTCTCAGGAC-ATACAAACACT-GTACACGTG
1 TTTTTCTCTTGTTT-AGATCTTGTCTCAGGACAAT-CAAACACTCCT-CACGTG
*
77716 TTTTACTCT
1 TTTTTCTCT
77725 CAGATATAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
50 9 0.18
51 41 0.80
52 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.43
Consensus pattern (51 bp):
TTTTTCTCTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCCTCACGTG
Found at i:78340 original size:49 final size:50
Alignment explanation
Indices: 78261--78379 Score: 206
Period size: 49 Copynumber: 2.4 Consensus size: 50
78251 GTGTGGGGTA
*
78261 ATAA-AAAAATGTAATTTTTATGTTAAAAGATGAAATGTTTAATTGACTT
1 ATAATAAAAATGTAATCTTTATGTTAAAAGATGAAATGTTTAATTGACTT
*
78310 ATAATAAAAATGTAATCTTT-TGTTAAAAGATGAAATTTTTAATTGACTT
1 ATAATAAAAATGTAATCTTTATGTTAAAAGATGAAATGTTTAATTGACTT
78359 ATAATAAAAATGTAATCTTTA
1 ATAATAAAAATGTAATCTTTA
78380 AACTAAAAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
49 52 0.79
50 14 0.21
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.41
Consensus pattern (50 bp):
ATAATAAAAATGTAATCTTTATGTTAAAAGATGAAATGTTTAATTGACTT
Found at i:78413 original size:50 final size:50
Alignment explanation
Indices: 78361--79056 Score: 394
Period size: 50 Copynumber: 13.8 Consensus size: 50
78351 ATTGACTTAT
* **
78361 AATAAAAATGTAATCTTTAAACTAAAAGA-TGAGACTTTTGGTTAATTAAT-
1 AATAAAAATGTAATCTTT-AAGTAAAAGATTGA-ACTTTTGGTTAATTTGTA
* * * ** *
78411 AATAAAAA-GGACATGTTTAAGGTAAAAGA-TGAAATTCTTGACTAATTTGTG
1 AATAAAAATGTA-ATCTTTAA-GTAAAAGATTGAACTT-TTGGTTAATTTGTA
* * *
78462 AATAAAAATG-AGATCTTTAAGTAAAAGATTGAACATTTGATTAATTTGTC
1 AATAAAAATGTA-ATCTTTAAGTAAAAGATTGAACTTTTGGTTAATTTGTA
* * * * * *
78512 AATAAAAATGAAATCTTTGGATTACAAA-AATGAACTTTTGGTT-GTTT-AA
1 AATAAAAATGTAATCTTT-AAGTA-AAAGATTGAACTTTTGGTTAATTTGTA
* * * *
78561 CAATAAAAATGAAATCTTTGAATTAAAAAATTGAACTTTTGGTTGAA--T-AA
1 -AATAAAAATGTAATCTTT-AAGTAAAAGATTGAACTTTTGGTT-AATTTGTA
* ** * * *
78611 CAACAAAAATG-AGATCTTCCGACTAAAAGATTGAACATTTGATTAATTTGTA
1 -AATAAAAATGTA-ATCTT-TAAGTAAAAGATTGAACTTTTGGTTAATTTGTA
*
78663 AATAAAAATG-AGATCTTTAAGTTAAAAGATTGAACTTTTAAG-TAATTTGTA
1 AATAAAAATGTA-ATCTTTAAG-TAAAAGATTGAACTTTT-GGTTAATTTGTA
* * * *
78714 AATAAAGATGTAACCTTTGAGTAAAAGATTGAACTTTTAAG-TAATTTGTA
1 AATAAAAATGTAATCTTTAAGTAAAAGATTGAACTTTT-GGTTAATTTGTA
* * * *
78764 AATAAAAAATGGAA-CGATTAAGCTAAAAGATTTAACTTTTAAG-TAATTTGTA
1 AAT-AAAAATGTAATC-TTTAAG-TAAAAGATTGAACTTTT-GGTTAATTTGTA
* * *
78816 AATAAAGATGTAACCTTTAAGTAAAAGATTGAACTTTTAAG-TAATTTGTA
1 AATAAAAATGTAATCTTTAAGTAAAAGATTGAACTTTT-GGTTAATTTGTA
* * ** *
78866 AATAAAAAATGTAATCTTTGAGTAAAAGATTGAGCCTTTAAG-TAATTTGTC
1 AAT-AAAAATGTAATCTTTAAGTAAAAGATTGA-ACTTTTGGTTAATTTGTA
* * * * **
78917 AATAAAAATG-AGATCTTCGAAATAAAAGATGGAGCTTTTGGTTAATTAAT-
1 AATAAAAATGTA-ATCTT-TAAGTAAAAGATTGAACTTTTGGTTAATTTGTA
* ** * *** *
78967 AATAAAAATGAAATCTTTGGGTTAAAATATTGAACATTAAAG-TGATTTGCT-
1 AATAAAAATGTAATCTTTAAG-TAAAAGATTGAAC-TTTTGGTTAATTTG-TA
* * * *
79018 TATGAAAATGAAATCTTTAAGTAAAAGATTGAATTTTTG
1 AATAAAAATGTAATCTTTAAGTAAAAGATTGAACTTTTG
79057 ATAAAGTTGA
Statistics
Matches: 523, Mismatches: 89, Indels: 69
0.77 0.13 0.10
Matches are distributed among these distances:
49 16 0.03
50 267 0.51
51 198 0.38
52 42 0.08
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (50 bp):
AATAAAAATGTAATCTTTAAGTAAAAGATTGAACTTTTGGTTAATTTGTA
Found at i:78549 original size:151 final size:151
Alignment explanation
Indices: 78361--78682 Score: 339
Period size: 151 Copynumber: 2.1 Consensus size: 151
78351 ATTGACTTAT
* * * * *
78361 AATAAAAATGTAATCTTTAAACTAAAAGATGAGACTTTTGGTTAATTAATAATAAAAAGGACATG
1 AATAAAAATGAAATCTTTAAACTAAAAAATGAGACTTTTGGTTAATTAACAATAAAAAGGAAATC
* *** * * *
78426 TTT-AAGGTAAAAGA-TGAAATTCTTGACT-AATTTGTGAATAAAAATGAGATCTT-TAAGTAAA
66 TTTGAA-GTAAAAAATTGAAATT-TTGACTGAA--TAACAACAAAAATGAGATCTTCCAACTAAA
*
78487 AGATTGAACATTTGATTAATTTGTC
127 AGATTGAACATTTGATTAATTTGTA
** * ** *
78512 AATAAAAATGAAATCTTTGGATTACAAAAATGA-ACTTTTGGTTGTTTAACAATAAAAATGAAAT
1 AATAAAAATGAAATCTTTAAACTA-AAAAATGAGACTTTTGGTTAATTAACAATAAAAAGGAAAT
* * ** *
78576 CTTTGAATTAAAAAATTGAACTTTTGGTTGAATAACAACAAAAATGAGATCTTCCGACTAAAAGA
65 CTTTGAAGTAAAAAATTGAAATTTTGACTGAATAACAACAAAAATGAGATCTTCCAACTAAAAGA
78641 TTGAACATTTGATTAATTTGTA
130 TTGAACATTTGATTAATTTGTA
*
78663 AATAAAAATGAGATCTTTAA
1 AATAAAAATGAAATCTTTAA
78683 GTTAAAAGAT
Statistics
Matches: 139, Mismatches: 27, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
150 17 0.12
151 105 0.76
152 17 0.12
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (151 bp):
AATAAAAATGAAATCTTTAAACTAAAAAATGAGACTTTTGGTTAATTAACAATAAAAAGGAAATC
TTTGAAGTAAAAAATTGAAATTTTGACTGAATAACAACAAAAATGAGATCTTCCAACTAAAAGAT
TGAACATTTGATTAATTTGTA
Found at i:78678 original size:51 final size:50
Alignment explanation
Indices: 78432--79057 Score: 436
Period size: 50 Copynumber: 12.4 Consensus size: 50
78422 CATGTTTAAG
* * * *
78432 GTAAAAGA-TGAAATTCTTGACTAATTTGTGAATAAAAATGAGATCTTTAA
1 GTAAAAGATTGAACTT-TTGAGTAATTTGTAAATAAAAATGAGATCTTTGA
* * * *
78482 GTAAAAGATTGAACATTTGATTAATTTGTCAATAAAAATGAAATCTTTGGA
1 GTAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATGAGATCTTT-GA
* * ** * *
78533 TTACAAA-AATGAACTTTTG-GTTGTTT-AACAATAAAAATGAAATCTTTGAA
1 GTA-AAAGATTGAACTTTTGAGTAATTTGTA-AATAAAAATGAGATCTTTG-A
* * * * *
78583 TTAAAAAATTGAACTTTTG-GTTGAA--T-AACAACAAAAATGAGATCTTCCGA
1 GTAAAAGATTGAACTTTTGAG-T-AATTTGTA-AATAAAAATGAGATCTT-TGA
* * * *
78633 CTAAAAGATTGAACATTTGATTAATTTGTAAATAAAAATGAGATCTTTAA
1 GTAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATGAGATCTTTGA
* * *
78683 GTTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAGATGTA-ACCTTTGA
1 G-TAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATG-AGATCTTTGA
* * * *
78734 GTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATG-GAACGATTAA
1 GTAAAAGATTGAACTTTTGAGTAATTTGTAAAT-AAAAATGAGATC-TTTGA
* * * * *
78785 GCTAAAAGATTTAACTTTTAAGTAATTTGTAAATAAAGATGTA-ACCTTTAA
1 G-TAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATG-AGATCTTTGA
*
78836 GTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGTA-ATCTTTGA
1 GTAAAAGATTGAACTTTTGAGTAATTTGTAAAT-AAAAATG-AGATCTTTGA
* * * * *
78887 GTAAAAGATTGAGCCTTTAAGTAATTTGTCAATAAAAATGAGATCTTCGAA
1 GTAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATGAGATCTTTG-A
* * * ** * *
78938 ATAAAAGATGGAGCTTTTG-GTTAATTAAT-AATAAAAATGAAATCTTTGG
1 GTAAAAGATTGAACTTTTGAG-TAATTTGTAAATAAAAATGAGATCTTTGA
* * ** * * * * *
78987 GTTAAAATATTGAACATTAAAGTGATTTGCT-TATGAAAATGAAATCTTTAA
1 G-TAAAAGATTGAACTTTTGAGTAATTTG-TAAATAAAAATGAGATCTTTGA
*
79038 GTAAAAGATTGAATTTTTGA
1 GTAAAAGATTGAACTTTTGA
79058 TAAAGTTGAG
Statistics
Matches: 469, Mismatches: 79, Indels: 56
0.78 0.13 0.09
Matches are distributed among these distances:
49 7 0.01
50 239 0.51
51 185 0.39
52 38 0.08
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (50 bp):
GTAAAAGATTGAACTTTTGAGTAATTTGTAAATAAAAATGAGATCTTTGA
Found at i:78739 original size:101 final size:100
Alignment explanation
Indices: 78432--79058 Score: 465
Period size: 101 Copynumber: 6.2 Consensus size: 100
78422 CATGTTTAAG
* * *
78432 GTAAAAGA-TGAAATTCTTGACTAATTTGTGAATAAAAATGAGATCTTTAAG-TAAAAGATTGAA
1 GTAAAAGATTGAACTT-TTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAA
* * * *
78495 CATTTGATTAATTTGTCAATAAAAATGAAATCTTTGGA
65 CTTTTAAGTAATTTGTAAATAAAAATG-AATCTTT-GA
* * * * * * *
78533 TTACAAA-AATGAACTTTTGGTT-GTTT-AACAATAAAAATGAAATCTTTGAA-TTAAAAAATTG
1 GTA-AAAGATTGAACTTTTGATTAATTTGTA-AATAAAAATGAGATCTTT-AAGTTAAAAGATTG
* * * *
78594 AACTTTT-GGTTGAA--T-AACAACAAAAATGAGATCTTCCGA
63 AACTTTTAAG-T-AATTTGTA-AATAAAAATGA-ATCTT-TGA
* *
78633 CTAAAAGATTGAACATTTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAAC
1 GTAAAAGATTGAACTTTTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAAC
* *
78698 TTTTAAGTAATTTGTAAATAAAGATGTAACCTTTGA
66 TTTTAAGTAATTTGTAAATAAAAATG-AATCTTTGA
* * * * * *
78734 GTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATG-GAACGATTAAGCTAAAAGATTTA
1 GTAAAAGATTGAACTTTTGATTAATTTGTAAAT-AAAAATGAGATC-TTTAAGTTAAAAGATTGA
* * *
78798 ACTTTTAAGTAATTTGTAAATAAAGATGTAACCTTTAA
64 ACTTTTAAGTAATTTGTAAATAAAAATG-AATCTTTGA
* * *
78836 GTAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGTA-ATCTTTGAG-TAAAAGATTGA
1 GTAAAAGATTGAACTTTTGATTAATTTGTAAAT-AAAAATG-AGATCTTTAAGTTAAAAGATTGA
* * * *
78899 GCCTTTAAGTAATTTGTCAATAAAAATGAGATCTTCGAA
64 ACTTTTAAGTAATTTGTAAATAAAAATGA-ATCTTTG-A
* * * * ** * ** *
78938 ATAAAAGATGGAGCTTTTGGTTAATTAAT-AATAAAAATGAAATCTTTGGGTTAAAATATTGAAC
1 GTAAAAGATTGAACTTTTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAAC
* * * * * *
79002 ATTAAAGTGATTTGCT-TATGAAAATGAAATCTTTAA
66 TTTTAAGTAATTTG-TAAATAAAAATG-AATCTTTGA
*
79038 GTAAAAGATTGAATTTTTGAT
1 GTAAAAGATTGAACTTTTGAT
79059 AAAGTTGAGA
Statistics
Matches: 424, Mismatches: 73, Indels: 59
0.76 0.13 0.11
Matches are distributed among these distances:
99 5 0.01
100 88 0.21
101 173 0.41
102 154 0.36
103 4 0.01
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (100 bp):
GTAAAAGATTGAACTTTTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAAC
TTTTAAGTAATTTGTAAATAAAAATGAATCTTTGA
Found at i:78809 original size:102 final size:100
Alignment explanation
Indices: 78634--78922 Score: 418
Period size: 102 Copynumber: 2.9 Consensus size: 100
78624 ATCTTCCGAC
* * * *
78634 TAAAAGATTGAACATTTGATTAATTTGTAAAT-AAAAATGAGATCTTTAAGTTAAAAGATTGAAC
1 TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATG-GAACTTTAAG-TAAAAGATTGAAC
*
78698 TTTTAAGTAATTTGTAAATAAAGATGTAACCTTTGAG
64 TTTTAAGTAATTTGTAAATAAAGATGTAACCTTTAAG
* *
78735 TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGGAACGATTAAGCTAAAAGATTTAAC
1 TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGGAAC-TTTAAG-TAAAAGATTGAAC
78800 TTTTAAGTAATTTGTAAATAAAGATGTAACCTTTAAG
64 TTTTAAGTAATTTGTAAATAAAGATGTAACCTTTAAG
* * * *
78837 TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGTAATCTTTGAGTAAAAGATTGAGCC
1 TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGGAA-CTTTAAGTAAAAGATTGAACT
*
78902 TTTAAGTAATTTGTCAATAAA
65 TTTAAGTAATTTGTAAATAAA
78923 AATGAGATCT
Statistics
Matches: 170, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
101 63 0.37
102 106 0.62
103 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.36
Consensus pattern (100 bp):
TAAAAGATTGAACTTTTAAGTAATTTGTAAATAAAAAATGGAACTTTAAGTAAAAGATTGAACTT
TTAAGTAATTTGTAAATAAAGATGTAACCTTTAAG
Found at i:78834 original size:153 final size:153
Alignment explanation
Indices: 78633--78924 Score: 453
Period size: 153 Copynumber: 1.9 Consensus size: 153
78623 GATCTTCCGA
* * *
78633 CTAAAAGATTGAACATTTGATTAATTTGTAAATAAAAATGAGATCTTTAAGTTAAAAGATTGAAC
1 CTAAAAGATTGAACATTTAAGTAATTTGTAAATAAAAATGAGACCTTTAAG-TAAAAGATTGAAC
* *
78698 TTTTAAGTAATTTGTAAAT-AAAGATGTAACCTTTGAGTAAAAGATTGAACTTTTAAGTAATTTG
65 TTTTAAGTAATTTGTAAATAAAAAATGTAACCTTTGAGTAAAAGATTGAACCTTTAAGTAATTTG
78762 TAAATAAAAAATGGAACGATTAAG
130 TAAATAAAAAATGGAACGATTAAG
* * *
78786 CTAAAAGATTTAACTTTTAAGTAATTTGTAAATAAAGATGTA-ACCTTTAAGTAAAAGATTGAAC
1 CTAAAAGATTGAACATTTAAGTAATTTGTAAATAAAAATG-AGACCTTTAAGTAAAAGATTGAAC
* *
78850 TTTTAAGTAATTTGTAAATAAAAAATGTAATCTTTGAGTAAAAGATTGAGCCTTTAAGTAATTTG
65 TTTTAAGTAATTTGTAAATAAAAAATGTAACCTTTGAGTAAAAGATTGAACCTTTAAGTAATTTG
*
78915 TCAATAAAAA
130 TAAATAAAAA
78925 TGAGATCTTC
Statistics
Matches: 126, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
152 32 0.25
153 93 0.74
154 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.14, T:0.35
Consensus pattern (153 bp):
CTAAAAGATTGAACATTTAAGTAATTTGTAAATAAAAATGAGACCTTTAAGTAAAAGATTGAACT
TTTAAGTAATTTGTAAATAAAAAATGTAACCTTTGAGTAAAAGATTGAACCTTTAAGTAATTTGT
AAATAAAAAATGGAACGATTAAG
Found at i:78840 original size:19 final size:19
Alignment explanation
Indices: 78818--78859 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
78808 AATTTGTAAA
78818 TAAAGA-TGTAACCTTTAAG
1 TAAAGATTG-AACCTTTAAG
*
78837 TAAAAGATTGAACTTTTAAG
1 T-AAAGATTGAACCTTTAAG
78857 TAA
1 TAA
78860 TTTGTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
19 3 0.15
20 15 0.75
21 2 0.10
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.33
Consensus pattern (19 bp):
TAAAGATTGAACCTTTAAG
Found at i:79593 original size:8 final size:8
Alignment explanation
Indices: 79580--79606 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
79570 GATTAAATTG
79580 AAAATTCA
1 AAAATTCA
79588 AAAATTCA
1 AAAATTCA
79596 AAAATTCA
1 AAAATTCA
79604 AAA
1 AAA
79607 GAACAGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAATTCA
Found at i:79688 original size:49 final size:49
Alignment explanation
Indices: 79635--79759 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 49
79625 TTTCTCAAAA
* * *
79635 TGCCCTTCCCGGTCGGAAGGTGTTGTTTTTTAAAGTCTCTTTTCTGTTT
1 TGCCCTTCCCGGTCGGAAGGTGTTGTTTTTCAAAGTCTCTTTCCTATTT
* *
79684 TGCCCTTCCAGGTCGGAAGGTGTTG-TTTTCAATGTCTCTTTCCTATTT
1 TGCCCTTCCCGGTCGGAAGGTGTTGTTTTTCAAAGTCTCTTTCCTATTT
* *
79732 TGCCCTTCCCGGTGGGAAAGTGTTGTTT
1 TGCCCTTCCCGGTCGGAAGGTGTTGTTT
79760 ACCTTTCCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
48 41 0.61
49 26 0.39
ACGTcount: A:0.11, C:0.22, G:0.24, T:0.43
Consensus pattern (49 bp):
TGCCCTTCCCGGTCGGAAGGTGTTGTTTTTCAAAGTCTCTTTCCTATTT
Found at i:79844 original size:89 final size:89
Alignment explanation
Indices: 79684--79849 Score: 210
Period size: 89 Copynumber: 1.9 Consensus size: 89
79674 TTTTCTGTTT
** * ** * * *
79684 TGCCCTTCCAGGTCGGAAGGTGTTGTTTTCAATGTCTCTTTCCTATTTTGCCCTTCCCGGTGGGA
1 TGCCCTTCCAGGTCGGAAGGTGTTGTTTAAAATGTCTCTTTCCCAAATTGCCCTTCACAGTCGGA
79749 AAGTGTTGTTTACCTTTCCAAGCA
66 AAGTGTTGTTTACCTTTCCAAGCA
*
79773 TGCCCTTCCCA-GTCGGAAGGTGTTGTTTAAATATGT-TTTTTCCCAAATTGCCCTTCACAGTCG
1 TGCCCTT-CCAGGTCGGAAGGTGTTGTTTAAA-ATGTCTCTTTCCCAAATTGCCCTTCACAGTCG
*
79836 GAAGGTGTTGTTTA
64 GAAAGTGTTGTTTA
79850 AGTTATCTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
89 58 0.89
90 7 0.11
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (89 bp):
TGCCCTTCCAGGTCGGAAGGTGTTGTTTAAAATGTCTCTTTCCCAAATTGCCCTTCACAGTCGGA
AAGTGTTGTTTACCTTTCCAAGCA
Found at i:79936 original size:49 final size:48
Alignment explanation
Indices: 79773--79973 Score: 237
Period size: 48 Copynumber: 4.1 Consensus size: 48
79763 TTTCCAAGCA
* * *
79773 TGCCCTTCCCAGTCGGAAGGTGTTGTTTAAATATGT-TTTTTCCCAAAT
1 TGCCCTTTCCAGTCGGAAGGTGTTGTTTAAGT-TGTCTTTTTCCTAAAT
* *
79821 TGCCC-TTCACAGTCGGAAGGTGTTGTTTAAGTTATCTTTTTCCAAAAT
1 TGCCCTTTC-CAGTCGGAAGGTGTTGTTTAAGTTGTCTTTTTCCTAAAT
* *
79869 TGCCC-TTCCTAGTCGGAAGGTGTTGTTTAAGGTTGTCTTTTTCCTGATT
1 TGCCCTTTCC-AGTCGGAAGGTGTTGTTTAA-GTTGTCTTTTTCCTAAAT
* * * *
79918 TGCCCTTTCCGGTTGGAAGGTATTGTTTAAGTTGTCTTTATTCCTAATT
1 TGCCCTTTCCAGTCGGAAGGTGTTGTTTAAGTTGTCTTT-TTCCTAAAT
79967 TGCCCTT
1 TGCCCTT
79974 CCTCACCAGA
Statistics
Matches: 135, Mismatches: 12, Indels: 11
0.85 0.08 0.07
Matches are distributed among these distances:
47 5 0.04
48 75 0.56
49 51 0.38
50 4 0.03
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.43
Consensus pattern (48 bp):
TGCCCTTTCCAGTCGGAAGGTGTTGTTTAAGTTGTCTTTTTCCTAAAT
Found at i:79956 original size:97 final size:97
Alignment explanation
Indices: 79773--79993 Score: 261
Period size: 97 Copynumber: 2.3 Consensus size: 97
79763 TTTCCAAGCA
*
79773 TGCCCTTCCCAGTCGGAAGGTGTTGTTTAAATATGTTTTTTCCCAAATTGCCCTTCACAGTCGGA
1 TGCCCTTCCTAGTCGGAAGGTGTTGTTTAAATATGTTTTTTCCCAAATTGCCCTTCACAGTCGGA
*
79838 AGGTGTTGTTTAAGTTATCTTT-TTCCAAAAT
66 AGGTATTGTTTAAGTTATCTTTATTCCAAAAT
* ** * * *
79869 TGCCCTTCCTAGTCGGAAGGTGTTGTTTAAGGT-TGTCTTTTTCCTGATTTGCCCTTTC-CGGTT
1 TGCCCTTCCTAGTCGGAAGGTGTTGTTTAA-ATATGT-TTTTTCCCAAATTGCCC-TTCACAGTC
* * *
79932 GGAAGGTATTGTTTAAGTTGTCTTTATTCCTAATT
63 GGAAGGTATTGTTTAAGTTATCTTTATTCCAAAAT
* *
79967 TGCCCTTCCTCA-CCAGAAGGTGTTGTT
1 TGCCCTTCCT-AGTCGGAAGGTGTTGTT
79994 CACTTGTCCT
Statistics
Matches: 107, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
96 32 0.30
97 41 0.38
98 33 0.31
99 1 0.01
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.42
Consensus pattern (97 bp):
TGCCCTTCCTAGTCGGAAGGTGTTGTTTAAATATGTTTTTTCCCAAATTGCCCTTCACAGTCGGA
AGGTATTGTTTAAGTTATCTTTATTCCAAAAT
Found at i:80074 original size:39 final size:39
Alignment explanation
Indices: 79948--80056 Score: 139
Period size: 41 Copynumber: 2.7 Consensus size: 39
79938 TATTGTTTAA
** *
79948 GTTGTCTTTATTCCTAATTTGCCCTTCCTCACCAGAAGGT
1 GTTGT-TTTATTCCTGTTTTGCCCTTCCCCACCAGAAGGT
*
79988 GTTGTTCACTT-GTCCTGTTTTGCCCTTCCCCACCAGAAGGT
1 GTTGTT---TTATTCCTGTTTTGCCCTTCCCCACCAGAAGGT
80029 GTTGTTTTATTCCTGTTTTGCCCTTCCC
1 GTTGTTTTATTCCTGTTTTGCCCTTCCC
80057 AGTTGGAAGG
Statistics
Matches: 60, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.03
39 19 0.32
40 5 0.08
41 32 0.53
42 2 0.03
ACGTcount: A:0.12, C:0.29, G:0.17, T:0.42
Consensus pattern (39 bp):
GTTGTTTTATTCCTGTTTTGCCCTTCCCCACCAGAAGGT
Found at i:80111 original size:49 final size:49
Alignment explanation
Indices: 80030--80123 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
80020 CCAGAAGGTG
* *
80030 TTGTTTTATTCCTGTTTTGCCCTTCCCAGTTGGAAGGTGTTGTTTAATT
1 TTGTCTTATTCCTGATTTGCCCTTCCCAGTTGGAAGGTGTTGTTTAATT
*
80079 TTGTCTTATTCCTGATTTGCCCTTCCCGGTTGGAAGGTGTTGTTT
1 TTGTCTTATTCCTGATTTGCCCTTCCCAGTTGGAAGGTGTTGTTT
80124 TTGTCATGTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.49
Consensus pattern (49 bp):
TTGTCTTATTCCTGATTTGCCCTTCCCAGTTGGAAGGTGTTGTTTAATT
Found at i:81983 original size:17 final size:17
Alignment explanation
Indices: 81961--81993 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81951 ATCCTTCTCT
*
81961 CTCCATTCTAGGGTTCC
1 CTCCATCCTAGGGTTCC
81978 CTCCATCCTAGGGTTC
1 CTCCATCCTAGGGTTC
81994 GATTCAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.36, G:0.18, T:0.33
Consensus pattern (17 bp):
CTCCATCCTAGGGTTCC
Found at i:90260 original size:19 final size:19
Alignment explanation
Indices: 90238--90288 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
90228 GGGCTAAAAT
90238 TAATTAATTATTAATTGAA
1 TAATTAATTATTAATTGAA
*
90257 TAA-TAATTATTTTATTGAA
1 TAATTAATTA-TTAATTGAA
90276 TAATT-ATTATTAA
1 TAATTAATTATTAA
90289 AAATCTCACA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
18 9 0.32
19 18 0.64
20 1 0.04
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
TAATTAATTATTAATTGAA
Found at i:91735 original size:51 final size:50
Alignment explanation
Indices: 91634--91735 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 50
91624 GTTCTTCATA
* **
91634 TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCTTTTAGTGT
1 TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT
* *
91684 TTTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGT
1 TTTTC-CTTGTTT-AGATCTTGTCTCAGGACAAACAAACACTCGTACA-GTGT
91735 T
1 T
91736 CTTCATTCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
50 7 0.16
51 36 0.82
52 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (50 bp):
TTTTCCTTGTTTAGATCTTGTCTCAGGACAAACAAACACTCGTACAGTGT
Found at i:102982 original size:13 final size:13
Alignment explanation
Indices: 102964--102989 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
102954 CTTAGCATGA
102964 GTGATGATTTTTG
1 GTGATGATTTTTG
102977 GTGATGATTTTTG
1 GTGATGATTTTTG
102990 TTGTTACCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
GTGATGATTTTTG
Found at i:128559 original size:29 final size:29
Alignment explanation
Indices: 128527--128622 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 29
128517 TAGAGCATGC
*
128527 AAAATGACCAAAACGCCCTTGAATGTGCA
1 AAAATGACCAAAATGCCCTTGAATGTGCA
* *
128556 AAAATGACCAAAATACCCCTGAATGTGCA
1 AAAATGACCAAAATGCCCTTGAATGTGCA
128585 AAAATGACCAAAATG-CCTCTGAATGTGC-
1 AAAATGACCAAAATGCCCT-TGAATGTGCA
128613 -AAATGACCAA
1 AAAATGACCAA
128623 TTAAGAAATA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
27 10 0.16
28 2 0.03
29 49 0.80
ACGTcount: A:0.44, C:0.23, G:0.16, T:0.18
Consensus pattern (29 bp):
AAAATGACCAAAATGCCCTTGAATGTGCA
Found at i:129105 original size:22 final size:22
Alignment explanation
Indices: 129077--129126 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
129067 GTTCCGGCCA
*
129077 CCGGCCGCCGACCGGCGAGCCT
1 CCGGCCGCCGACCAGCGAGCCT
129099 CCGGCCGCCGACCAGCGAGCCT
1 CCGGCCGCCGACCAGCGAGCCT
129121 CCGGCC
1 CCGGCC
129127 ATCAAATTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.10, C:0.52, G:0.34, T:0.04
Consensus pattern (22 bp):
CCGGCCGCCGACCAGCGAGCCT
Found at i:131306 original size:23 final size:24
Alignment explanation
Indices: 131280--131325 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
131270 GCGCCACCTC
131280 CTTC-TCCTTGTATGGG-GTTTTCT
1 CTTCTTCCTTGTA-GGGAGTTTTCT
*
131303 CTTCTTTCTTGTAGGGAGTTTTC
1 CTTCTTCCTTGTAGGGAGTTTTC
131326 CATGAGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.07, C:0.20, G:0.22, T:0.52
Consensus pattern (24 bp):
CTTCTTCCTTGTAGGGAGTTTTCT
Found at i:132755 original size:18 final size:19
Alignment explanation
Indices: 132722--132761 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
132712 AATTTTCTCC
132722 AATTAGGGCTAATTGCACA
1 AATTAGGGCTAATTGCACA
*
132741 AATTAGGTC-AATTGCACA
1 AATTAGGGCTAATTGCACA
132759 AAT
1 AAT
132762 CAAGAACTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (19 bp):
AATTAGGGCTAATTGCACA
Found at i:132944 original size:17 final size:17
Alignment explanation
Indices: 132922--132955 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
132912 TCTGGTCGAA
132922 ATTTTTTT-ATTATTTTT
1 ATTTTTTTGA-TATTTTT
132939 ATTTTTTTGATATTTTT
1 ATTTTTTTGATATTTTT
132956 TTATATAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.94
18 1 0.06
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (17 bp):
ATTTTTTTGATATTTTT
Found at i:133553 original size:65 final size:65
Alignment explanation
Indices: 133477--133600 Score: 230
Period size: 65 Copynumber: 1.9 Consensus size: 65
133467 TATTGATTCC
* *
133477 AACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCTCATGCATGGGTCGGACGATTGA
1 AACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCCATGCATGGGTAGGACGATTGA
133542 AACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCCATGCATGGGTAGGAC
1 AACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCCATGCATGGGTAGGAC
133601 CAGTTTTTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.20
Consensus pattern (65 bp):
AACTTTCTGCACTAGCCCAGGCGTGGGTAGGCCAAGGGTACCCCATGCATGGGTAGGACGATTGA
Done.