Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022357.1 Corchorus olitorius cultivar O-4 contig22390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18933

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1126--1206
22
3.4
23
73
17
76
12
14
16
56
1.67
1818--1953
52
2.6
52
94
0
236
30
19
14
35
1.92
1922--2112
36
5.2
37
72
16
130
29
13
16
40
1.87
5114--5158
14
3.3
13
84
9
54
48
6
13
31
1.68
5823--5861
20
2.0
20
89
0
60
48
7
7
35
1.61
6260--6285
13
2.0
13
100
0
52
38
0
23
38
1.55
7196--7479
35
8.6
35
73
14
255
20
25
20
33
1.97
7254--7304
26
2.0
26
84
3
68
19
25
25
29
1.99
7231--7345
61
1.9
61
85
3
160
20
26
20
32
1.98
7177--7476
96
3.1
96
93
2
514
21
25
20
33
1.97
7388--7502
35
3.3
35
87
2
151
21
23
20
34
1.96
7572--7650
22
3.6
22
89
0
86
35
21
2
40
1.67
7588--7681
14
6.3
15
70
19
54
35
20
4
40
1.72
7596--7657
22
2.8
22
95
0
106
35
22
1
40
1.64
7594--7689
22
4.3
21
80
11
102
36
20
3
39
1.69
7600--7713
24
4.9
24
83
2
74
37
19
4
38
1.72
7643--7674
16
2.0
17
88
11
50
34
15
6
43
1.72
7783--8135
54
6.6
54
81
2
406
29
15
21
33
1.95
7790--8178
161
2.4
161
83
4
464
29
15
22
32
1.95
8168--8197
15
2.0
15
100
0
60
20
20
26
33
1.97
14765--14835
21
3.4
21
96
0
124
16
45
23
14
1.84
15221--15250
15
2.1
14
93
6
51
13
16
6
63
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16676--16736
29
2.0
31
87
6
90
36
8
18
37
1.80

Tables:   1

The End!