Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022360.1 Corchorus olitorius cultivar O-4 contig22393, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:1295 original size:29 final size:31

Alignment explanation


    Indices: 1230--1287  Score: 93
    Period size: 29  Copynumber: 1.9  Consensus size: 31

       1220 TTTTTTTTTC

                                           
       1230 AAAAACGCAACAACAAAAAATTAAAAACGCA
          1 AAAAACGCAACAACAAAAAATTAAAAACGCA

                           *             
       1261 AAAAACGC-A-AACACAAAATTAAAAACG
          1 AAAAACGCAACAACAAAAAATTAAAAACG

       1288 GACAAAACAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  29   17  0.65
  30    1  0.04
  31    8  0.31

ACGTcount: A:0.67, C:0.19, G:0.07, T:0.07


Consensus pattern (31 bp):   
AAAAACGCAACAACAAAAAATTAAAAACGCA
Done.