Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022366.1 Corchorus olitorius cultivar O-4 contig22399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61124

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6590--6625
18
2.1
17
89
5
54
38
8
5
47
1.57
14037--14102
32
2.1
32
100
0
132
42
18
9
30
1.81
15531--15589
31
1.9
31
89
0
91
13
22
5
59
1.54
17311--17337
9
3.0
9
100
0
54
33
22
0
44
1.53
24121--24724
54
11.6
53
80
12
566
47
6
19
26
1.72
24121--24724
163
3.9
161
81
9
648
47
6
19
26
1.72
24338--24724
109
3.6
105
84
7
483
47
5
19
27
1.72
27748--27866
35
3.4
35
90
2
186
25
15
18
40
1.90
37764--37789
11
2.4
11
100
0
52
7
15
7
69
1.35
41297--41957
54
12.6
53
81
9
661
48
5
19
25
1.71
41297--41957
109
6.3
107
81
10
703
48
5
19
25
1.71
41297--41958
163
4.2
161
84
7
769
48
5
19
25
1.71
43103--43243
22
6.5
22
75
14
105
38
12
8
41
1.73
43103--43243
43
3.2
42
80
13
128
38
12
8
41
1.73
43145--43243
44
2.2
44
84
11
132
39
13
8
39
1.74
43519--43607
45
2.0
45
88
0
133
34
14
10
40
1.80
43992--44050
30
2.0
30
100
0
118
57
11
0
30
1.35
52065--52311
133
1.9
133
91
2
408
49
2
10
37
1.50
55051--55077
4
6.8
4
100
0
54
48
0
0
51
1.00
57308--57354
21
2.2
21
85
7
60
6
27
40
25
1.80

Tables:   1

The End!