Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022367.1 Corchorus olitorius cultivar O-4 contig22400, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1916
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1226 original size:24 final size:25

Alignment explanation


    Indices: 1180--1227  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 25

       1170 ATTGGAGTAT

                           *         
       1180 TTATTTATCTTGTTGCTTAATTTTA
          1 TTATTTATCTTGTTGATTAATTTTA

                          *   *     
       1205 TTATTT-TCTTGTTTATTTATTTT
          1 TTATTTATCTTGTTGATTAATTTT

       1228 TATTGTTTCT


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  24   14  0.70
  25    6  0.30

ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71


Consensus pattern (25 bp):   
TTATTTATCTTGTTGATTAATTTTA

Found at i:1883 original size:21 final size:21

Alignment explanation


    Indices: 1859--1916  Score: 89
    Period size: 21  Copynumber: 2.8  Consensus size: 21

       1849 GAAAACCAAA

                 *      *        
       1859 GAGAANATGTTGNGACATGAG
          1 GAGAATATGTTGAGACATGAG

                                 
       1880 GAGAATATGTTGAGACATGAG
          1 GAGAATATGTTGAGACATGAG

            *               
       1901 AAGAATATGTTGAGAC
          1 GAGAATATGTTGAGAC


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  21   34  1.00

ACGTcount: A:0.38, C:0.05, G:0.31, T:0.22


Consensus pattern (21 bp):   
GAGAATATGTTGAGACATGAG
Done.