Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002237.1 Corchorus olitorius cultivar O-4 contig02237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35


Found at i:172 original size:28 final size:28

Alignment explanation


    Indices: 131--206  Score: 66
    Period size: 28  Copynumber: 2.7  Consensus size: 28

        121 TTAAAATGTC

                    **               *  
        131 AAAATTACTGTTTTGCCCTTGGTAGGCT
          1 AAAATTACCATTTTGCCCTTGGTAGACT

                           *   *    *    
        159 AAAATTACCATTTTACCCCCTGGTTGACT
          1 AAAATTACCATTTT-GCCCTTGGTAGACT

                                 
        188 -AAATTA-CAGTTTTGCCCTT
          1 AAAATTACCA-TTTTGCCCTT

        207 AAATGCTGGA


Statistics
Matches: 38,  Mismatches: 8, Indels: 5
        0.75            0.16        0.10

Matches are distributed among these distances:
  27    6  0.16
  28   22  0.58
  29   10  0.26

ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38


Consensus pattern (28 bp):   
AAAATTACCATTTTGCCCTTGGTAGACT
Done.