Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022370.1 Corchorus olitorius cultivar O-4 contig22403, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3737
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31


Found at i:1122 original size:9 final size:9

Alignment explanation


    Indices: 1102--1139  Score: 60
    Period size: 9  Copynumber: 4.3  Consensus size: 9

       1092 TTAATTCATT

                     
       1102 TAATTTCC-
          1 TAATTTCCA

                     
       1110 TAATTTCCA
          1 TAATTTCCA

                    *
       1119 TAATTTCCC
          1 TAATTTCCA

                     
       1128 TAATTTCCA
          1 TAATTTCCA

               
       1137 TAA
          1 TAA

       1140 GTAATTTGGG


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   8    8  0.30
   9   19  0.70

ACGTcount: A:0.32, C:0.24, G:0.00, T:0.45


Consensus pattern (9 bp):   
TAATTTCCA

Found at i:1131 original size:18 final size:17

Alignment explanation


    Indices: 1102--1139  Score: 67
    Period size: 18  Copynumber: 2.2  Consensus size: 17

       1092 TTAATTCATT

                             
       1102 TAATTTCCTAATTTCCA
          1 TAATTTCCTAATTTCCA

                              
       1119 TAATTTCCCTAATTTCCA
          1 TAATTT-CCTAATTTCCA

               
       1137 TAA
          1 TAA

       1140 GTAATTTGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  17    6  0.30
  18   14  0.70

ACGTcount: A:0.32, C:0.24, G:0.00, T:0.45


Consensus pattern (17 bp):   
TAATTTCCTAATTTCCA
Done.