Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022381.1 Corchorus olitorius cultivar O-4 contig22414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46887

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1269--1306
18
2.1
18
90
0
58
68
7
15
7
1.37
6019--6060
21
2.0
21
86
4
59
40
11
7
40
1.69
13190--13334
44
3.3
44
78
3
150
38
15
11
35
1.82
13211--13766
22
25.5
22
65
15
127
36
17
10
35
1.84
15758--15784
13
2.1
13
100
0
54
55
14
7
22
1.64
21555--21632
32
2.6
30
78
13
81
33
15
29
21
1.94
23057--23397
168
2.0
168
100
0
682
24
2
30
42
1.69
23480--23520
3
13.3
3
87
5
55
63
2
34
0
1.08
23622--23677
7
8.0
7
78
13
62
71
0
26
1
0.96
23633--23676
15
3.0
15
83
6
63
72
0
25
2
0.96
28750--28791
15
2.7
15
88
3
57
64
14
11
9
1.50
30287--30353
35
1.9
35
100
0
134
53
13
5
26
1.62
32750--32825
32
2.4
32
90
0
116
22
27
25
25
2.00
39195--39625
194
2.2
195
89
2
643
34
20
17
27
1.95
39195--39647
195
2.3
194
86
3
572
34
20
18
27
1.95
43198--44456
439
2.8
443
90
2
1875
42
16
13
26
1.87
45431--45456
2
13.0
2
100
0
52
0
50
0
50
1.00
45456--45550
2
47.5
2
97
0
181
0
0
48
51
1.00

Tables:   1

The End!