Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022382.1 Corchorus olitorius cultivar O-4 contig22415, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2794
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.35


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--28  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

                                                     
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT

         29 GTGTGTGTGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:33 original size:2 final size:2

Alignment explanation


    Indices: 28--120  Score: 177
    Period size: 2  Copynumber: 46.5  Consensus size: 2

         18 TCTCTCTCTC

                                                                          
         28 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

                                                                          
         70 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
          1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG

                *        
        112 TG TT TG TG T
          1 TG TG TG TG T

        121 TGTTGTTTGG


Statistics
Matches: 89,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   2   89  1.00

ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52


Consensus pattern (2 bp):   
TG

Done.