Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022384.1 Corchorus olitorius cultivar O-4 contig22417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56996

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--48
2
20.0
2
100
0
80
50
0
0
50
1.00
521--1525
35
28.7
35
82
2
1079
40
22
19
17
1.91
22371--22416
18
2.6
18
82
0
56
82
6
6
4
0.94
22371--22404
6
5.7
6
96
0
50
85
8
5
0
0.75
24862--24897
18
2.0
18
100
0
72
66
11
11
11
1.45
34659--34695
16
2.3
16
100
0
74
45
21
24
8
1.78
35220--35245
11
2.4
11
100
0
52
23
23
26
26
2.00
35772--35818
23
2.0
23
95
0
85
44
40
4
10
1.59
36122--36174
21
2.5
20
88
8
79
47
5
16
30
1.70
36129--36181
21
2.5
21
93
0
88
50
3
13
32
1.59
38269--38309
21
2.0
21
85
0
55
56
24
0
19
1.42
38511--38557
2
23.5
2
95
0
85
48
2
48
0
1.13
39467--39688
22
10.1
22
73
13
145
38
16
10
34
1.82
39467--39903
44
9.9
44
69
14
195
37
17
10
35
1.84
39446--39688
88
2.8
87
84
3
283
39
15
10
34
1.82
39691--39793
22
4.7
22
76
0
80
33
18
9
38
1.83
39846--39916
22
3.3
21
71
9
54
33
14
9
42
1.78
40972--41012
15
2.5
18
81
18
54
63
0
0
36
0.95
49545--49593
24
2.0
26
88
8
75
36
2
4
57
1.30
49545--49596
25
2.0
26
85
3
70
34
3
3
57
1.35

Tables:   1

The End!