Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022386.1 Corchorus olitorius cultivar O-4 contig22419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32637

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--144
30
3.0
27
84
10
121
42
3
3
50
1.37
5150--5213
25
2.6
25
80
9
69
31
17
39
12
1.87
7408--7536
68
1.9
68
92
6
217
23
12
16
48
1.80
21823--21870
17
2.8
17
83
0
60
27
8
20
43
1.80
23020--23058
20
2.0
20
85
10
53
28
5
2
64
1.28
23082--23149
34
2.0
34
100
0
136
41
17
14
26
1.88
23258--23410
22
6.9
22
76
10
105
35
10
16
37
1.83
23448--23599
22
6.7
24
75
15
128
34
9
18
38
1.83
23718--23914
22
8.9
22
71
8
105
39
9
14
36
1.79
23764--23914
44
3.4
44
72
7
126
39
9
13
37
1.79
24215--24341
39
3.3
39
96
0
227
14
37
36
11
1.84
24862--25134
22
12.6
22
72
17
121
38
9
16
36
1.80
24843--25313
44
10.8
44
73
8
331
36
10
16
36
1.83
24929--25309
22
17.5
22
72
9
154
35
10
17
36
1.84
25295--25336
22
1.9
22
85
9
59
54
4
11
28
1.57
27326--27370
23
2.0
22
82
4
54
42
8
20
28
1.82

Tables:   1

The End!