genome.fa.s22394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022394.1 Corchorus olitorius cultivar O-4 contig22427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80438

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1125--1191	23	3.2	23	60	27	58	10	13	26	49	1.74
1110--1191	39	2.1	39	100	0	164	9	12	25	52	1.69
1619--2055	52	8.4	52	92	3	745	35	16	20	27	1.94
3235--3293	30	2.0	30	96	0	109	23	5	32	38	1.77
4942--6290	334	4.1	327	81	6	1458	32	14	17	35	1.90
5675--7552	655	3.0	611	85	7	2311	33	14	16	35	1.89
6289--8727	655	3.7	653	82	5	2684	32	14	16	36	1.89
6292--8869	983	2.6	973	85	5	3358	32	14	17	36	1.89
9839--9883	20	2.2	20	100	0	90	48	11	13	26	1.75
10626--10836	72	3.1	70	84	14	312	36	20	40	2	1.68
10608--10835	62	3.5	62	71	15	199	35	21	39	3	1.69
10817--10913	24	4.2	23	65	26	62	46	19	31	2	1.62
10802--10930	34	3.8	34	95	0	222	46	18	31	3	1.65
11796--11894	45	2.2	45	96	0	180	30	20	24	25	1.99
15996--16041	22	2.1	22	84	8	58	65	0	30	4	1.12
25883--25907	12	2.1	12	100	0	50	20	8	32	40	1.81
29774--29817	13	3.3	13	90	3	61	18	25	31	25	1.97
29780--29821	7	6.1	7	83	5	59	23	26	30	19	1.98
35887--35920	16	2.1	17	88	5	52	47	29	11	11	1.76
49679--49717	20	2.0	19	85	5	51	53	17	7	20	1.68
50518--50575	19	2.9	20	87	5	82	29	20	12	37	1.89
56122--56181	21	2.9	21	97	0	111	36	10	21	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79667--79865	104	1.9	104	93	2	346	27	20	11	40	1.87

Tables:   1

The End!