Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022395.1 Corchorus olitorius cultivar O-4 contig22428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114232

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15285--15333
19
2.5
19
81
18
57
61
0
38
0
0.96
15285--15333
21
2.3
21
86
6
64
61
0
38
0
0.96
23253--23284
1
32.0
1
93
0
55
96
3
0
0
0.20
29491--29548
19
2.9
19
87
5
80
29
22
12
36
1.90
32436--32478
21
2.0
21
86
0
59
39
11
9
39
1.74
32456--32494
19
2.1
19
90
0
60
33
20
10
35
1.86
33033--33098
12
5.5
12
85
5
89
1
25
4
68
1.18
33033--33107
36
2.1
36
85
5
98
1
26
4
68
1.16
40541--40576
2
18.0
2
100
0
72
50
0
0
50
1.00
41965--41992
14
2.0
14
100
0
56
50
14
7
28
1.69
71989--72017
15
1.9
15
100
0
58
62
0
0
37
0.96
75727--75760
17
2.0
17
100
0
68
41
17
5
35
1.74
75728--75767
17
2.3
17
91
4
62
47
17
7
27
1.74
78157--78202
15
3.2
15
77
20
53
4
19
8
67
1.35
88794--88910
30
3.7
29
74
21
117
47
13
5
33
1.65
88780--88916
68
2.0
68
100
0
274
45
14
6
33
1.71
90721--90802
41
2.0
40
88
2
119
43
3
13
39
1.61
92852--92886
11
3.2
11
83
0
52
77
17
5
0
0.96
100215--100246
2
16.0
2
100
0
64
50
0
0
50
1.00
101543--101627
42
2.0
42
95
0
152
23
7
31
37
1.82
101720--102648
328
2.8
328
83
5
1101
36
15
14
33
1.88
109380--109478
45
2.2
45
96
0
180
25
24
20
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110341--110464
34
3.6
34
94
0
212
3
32
18
45
1.65
110439--110663
62
3.5
62
87
11
351
3
40
21
35
1.69
110491--110639
72
2.1
72
98
0
289
2
42
19
35
1.66
110553--110577
10
2.5
10
100
0
50
0
52
0
48
1.00
111373--111432
20
3.0
20
90
4
68
26
16
8
48
1.75
111388--111429
20
2.0
22
90
9
70
26
14
9
50
1.73

Tables:   1

The End!