Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022397.1 Corchorus olitorius cultivar O-4 contig22430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147471

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1150--4772
662
5.5
663
85
4
4087
35
17
13
33
1.89
1475--4772
332
9.9
333
84
3
4204
35
17
13
33
1.90
1150--4772
993
3.7
992
84
4
4420
35
17
13
33
1.89
8096--8155
21
3.0
20
75
7
68
40
11
15
33
1.83
11205--11233
1
29.0
1
100
0
58
0
0
0
100
0.00
18137--18164
12
2.3
12
100
0
56
28
7
10
53
1.62
19310--19444
71
1.9
71
96
0
252
31
19
20
28
1.97
36689--36744
28
2.0
29
89
3
87
32
7
16
44
1.74
38456--38483
2
14.0
2
100
0
56
50
0
0
50
1.00
38806--38970
31
5.5
31
64
22
91
34
17
18
29
1.94
38807--38970
60
2.7
60
90
1
249
34
17
18
29
1.94
39033--39141
29
3.7
29
73
9
94
32
18
15
33
1.92
39008--39172
60
2.8
60
87
0
249
30
18
15
35
1.93
39009--39174
31
5.5
30
72
13
117
30
18
16
34
1.93
47467--47515
5
9.8
5
81
16
57
0
16
0
83
0.64
47472--47512
22
2.0
20
90
9
64
0
19
0
80
0.71
51839--51863
12
2.1
12
100
0
50
48
16
0
36
1.46
72505--72570
33
2.0
33
100
0
132
24
27
27
21
1.99
79270--79303
11
3.1
11
91
0
50
26
14
2
55
1.53
89165--89193
15
1.9
15
100
0
58
27
0
6
65
1.18
89851--90153
110
2.8
109
90
2
482
33
13
15
36
1.87
90240--90282
21
2.0
21
95
0
77
37
30
16
16
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92779--92817
19
2.1
19
100
0
78
38
20
10
30
1.86
100180--100214
18
1.9
18
88
0
52
17
22
14
45
1.84
113381--113449
27
2.6
27
100
0
138
49
13
13
24
1.77
114041--114094
25
2.1
26
86
3
74
31
11
1
55
1.45
117169--117220
17
2.9
17
77
11
52
73
1
1
23
1.04
120218--120325
50
2.2
50
100
0
216
29
21
12
36
1.91
138918--139024
52
2.1
52
90
0
169
34
17
12
35
1.87

Tables:   1

The End!