Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022400.1 Corchorus olitorius cultivar O-4 contig22433, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45000

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
407--1647
321
3.8
331
83
5
1428
33
15
15
36
1.88
9026--9064
2
19.5
2
100
0
78
48
0
0
51
1.00
17625--17683
3
20.0
3
73
16
52
59
1
3
35
1.24
17625--17683
18
3.4
17
81
11
66
59
1
3
35
1.24
17939--17978
19
2.1
19
100
0
80
25
15
10
50
1.74
18408--18473
30
2.2
30
94
0
114
40
12
9
37
1.74
19830--19902
2
39.5
2
71
15
50
47
0
1
50
1.09
19824--19896
24
3.1
24
76
9
78
45
0
1
53
1.09
21531--21594
21
3.1
21
72
17
71
37
9
21
31
1.85
36163--36302
70
2.0
70
100
0
280
35
14
18
31
1.91
40424--40488
22
3.0
22
86
0
85
35
15
6
43
1.72

Tables:   1

The End!