Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022401.1 Corchorus olitorius cultivar O-4 contig22434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95603

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6511--6557
22
2.1
22
81
14
53
59
0
12
27
1.34
6527--6569
22
2.0
22
85
0
59
60
0
11
27
1.31
7292--7327
13
2.8
13
86
0
54
16
41
8
33
1.78
7329--7407
40
2.0
40
92
0
131
41
15
13
29
1.85
8541--8633
18
5.7
16
70
20
68
21
8
18
51
1.72
8548--8633
17
5.3
16
70
20
54
22
8
18
51
1.72
8541--8638
32
3.1
32
96
0
178
22
8
17
52
1.71
9088--9207
61
2.0
61
93
0
204
30
20
15
32
1.94
9403--9435
14
2.4
14
100
0
66
24
24
0
51
1.48
13865--14093
122
1.9
122
87
1
343
28
14
14
42
1.85
23591--23620
3
10.0
3
100
0
60
66
0
33
0
0.92
24336--24360
2
12.5
2
100
0
50
52
0
0
48
1.00
24528--24582
28
2.0
28
88
0
83
30
7
20
41
1.79
27175--27221
6
7.8
6
95
0
76
2
34
2
61
1.20
32930--33004
30
2.6
30
89
4
118
38
16
26
18
1.91
52606--52663
21
2.9
19
80
9
71
41
12
15
31
1.84
55455--55485
7
4.4
7
95
0
53
29
51
19
0
1.47
61969--62064
45
2.1
45
98
0
183
13
50
13
22
1.77
64681--64738
19
2.9
19
82
5
62
37
10
20
31
1.86
65376--65409
6
5.7
6
96
0
59
82
0
0
17
0.67
66318--66481
82
2.0
82
90
2
258
29
20
19
30
1.97
70763--70820
19
2.9
20
77
7
64
39
12
17
31
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70767--70820
21
2.7
20
77
5
56
40
11
16
31
1.84
72060--72086
2
13.5
2
100
0
54
51
0
0
48
1.00
83981--84010
12
2.5
12
88
0
51
56
33
0
10
1.32
93470--93512
19
2.3
18
80
11
50
18
2
2
76
1.00

Tables:   1

The End!