Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022408.1 Corchorus olitorius cultivar O-4 contig22441, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65543

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1134--1984
333
2.6
332
82
5
1001
32
15
15
35
1.90
1799--2491
253
2.8
254
85
5
960
27
20
17
33
1.95
2297--3467
333
3.5
329
84
4
1387
32
15
16
35
1.91
3547--6150
335
7.8
332
83
5
3091
32
15
15
35
1.90
6788--6815
14
2.0
14
100
0
56
28
35
14
21
1.92
6156--7631
334
4.4
332
81
9
1648
32
15
15
35
1.90
6202--7631
683
2.1
667
84
8
1844
33
15
15
35
1.89
7452--7801
176
2.0
177
84
5
458
28
21
17
32
1.96
12612--12701
47
1.9
47
100
0
180
35
30
12
22
1.90
25615--25671
27
2.1
27
96
0
105
50
14
12
22
1.75
41686--41712
2
13.5
2
100
0
54
51
0
0
48
1.00
44815--44844
10
3.0
10
95
0
51
53
20
0
26
1.46
48374--48460
36
2.5
35
91
8
144
27
10
6
55
1.59
48949--48979
2
15.5
2
100
0
62
48
0
0
51
1.00
51008--51044
18
2.1
18
90
5
58
62
24
5
8
1.44
55480--55505
4
6.5
4
100
0
52
50
0
0
50
1.00
56556--56617
30
2.1
30
96
0
115
30
6
11
51
1.63
57066--57099
16
2.1
16
100
0
68
17
26
11
44
1.83
65502--65543
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!