Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022410.1 Corchorus olitorius cultivar O-4 contig22443, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 38891
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:2211 original size:3 final size:3

Alignment explanation


    Indices: 2203--2250  Score: 60
    Period size: 3  Copynumber: 16.0  Consensus size: 3

       2193 AGAATTTGCA

                             *      *   *    *                             
       2203 TTC TTC TTC TTC TCC TTC CTC CTC TCC TTC TTC TTC TTC TTC TTC TTC
          1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC

       2251 AATAGCTTAT


Statistics
Matches: 39,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58


Consensus pattern (3 bp):   
TTC

Found at i:5450 original size:7 final size:7

Alignment explanation


    Indices: 5440--5473  Score: 68
    Period size: 7  Copynumber: 4.9  Consensus size: 7

       5430 GTTTTTGTAC

                   
       5440 TTTGGCA
          1 TTTGGCA

                   
       5447 TTTGGCA
          1 TTTGGCA

                   
       5454 TTTGGCA
          1 TTTGGCA

                   
       5461 TTTGGCA
          1 TTTGGCA

                  
       5468 TTTGGC
          1 TTTGGC

       5474 TTTATTTGAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   27  1.00

ACGTcount: A:0.12, C:0.15, G:0.29, T:0.44


Consensus pattern (7 bp):   
TTTGGCA

Done.