Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022412.1 Corchorus olitorius cultivar O-4 contig22445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29028

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1689--1715
2
13.5
2
100
0
54
51
0
0
48
1.00
8566--8609
18
2.4
18
80
0
52
18
65
4
11
1.40
8560--8612
27
2.0
27
88
7
81
16
66
5
11
1.42
8566--8615
24
2.1
24
84
0
64
18
66
6
10
1.42
11152--11209
19
2.9
20
79
5
64
29
20
12
37
1.89
23335--23359
13
1.9
13
100
0
50
48
8
24
20
1.76
23847--23908
8
7.9
8
90
5
92
48
29
0
22
1.51
28105--28188
3
27.7
3
92
2
141
65
1
0
33
1.00

Tables:   1

The End!