Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022413.1 Corchorus olitorius cultivar O-4 contig22446, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87120
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:375 original size:14 final size:14
Alignment explanation
Indices: 356--402 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
346 TATCCTTATA
356 ACTATTTTATTTTT
1 ACTATTTTATTTTT
370 ACTATTTTACTATTTT
1 ACTATTTTA-T-TTTT
*
386 ACT-TTTATAGTTTT
1 ACTATTT-TATTTTT
400 ACT
1 ACT
403 CAACTAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 16 0.55
15 4 0.14
16 9 0.31
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.64
Consensus pattern (14 bp):
ACTATTTTATTTTT
Found at i:379 original size:8 final size:8
Alignment explanation
Indices: 356--388 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
346 TATCCTTATA
356 ACTATTTT
1 ACTATTTT
364 A-T-TTTT
1 ACTATTTT
370 ACTATTTT
1 ACTATTTT
378 ACTATTTT
1 ACTATTTT
386 ACT
1 ACT
389 TTTATAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.22
7 2 0.09
8 16 0.70
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (8 bp):
ACTATTTT
Found at i:384 original size:22 final size:22
Alignment explanation
Indices: 356--402 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
346 TATCCTTATA
*
356 ACTATTTTATTTTTACTA-TTTT
1 ACTATTTTACTTTTA-TAGTTTT
378 ACTATTTTACTTTTATAGTTTT
1 ACTATTTTACTTTTATAGTTTT
400 ACT
1 ACT
403 CAACTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.64
Consensus pattern (22 bp):
ACTATTTTACTTTTATAGTTTT
Found at i:392 original size:93 final size:93
Alignment explanation
Indices: 295--479 Score: 307
Period size: 93 Copynumber: 2.0 Consensus size: 93
285 TTATTTAAAT
* * *
295 TTTTATAGTTTTAGTCAACTAAAAACTCTATTTTTATTTAATTACATCTAATATCCTTATAACTA
1 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
* * *
360 TTTTATTTTTACTATTTTACTATTTTAC
66 TTTTATTTTTACAATATTACTAATTTAC
*
388 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATATCTA
1 TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
453 TTTTATTTTTACAATATTACTAATTTA
66 TTTTATTTTTACAATATTACTAATTTA
480 ATTAAAAAAG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 85 1.00
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.52
Consensus pattern (93 bp):
TTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
TTTTATTTTTACAATATTACTAATTTAC
Found at i:7920 original size:21 final size:21
Alignment explanation
Indices: 7894--7933 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7884 AACTGGACGG
7894 GGTCTTACAAGGTCAAGAAAA
1 GGTCTTACAAGGTCAAGAAAA
7915 GGTCTTACAAGGTCAAGAA
1 GGTCTTACAAGGTCAAGAA
7934 GATAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (21 bp):
GGTCTTACAAGGTCAAGAAAA
Found at i:11743 original size:6 final size:6
Alignment explanation
Indices: 11732--11773 Score: 84
Period size: 6 Copynumber: 7.0 Consensus size: 6
11722 CACACCAATC
11732 ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA
1 ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA ATCCCA
11774 TGCATTCTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (6 bp):
ATCCCA
Found at i:25883 original size:16 final size:16
Alignment explanation
Indices: 25862--25893 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25852 TCAGTTGAAC
25862 GGTTGAAGTCAAATAT
1 GGTTGAAGTCAAATAT
*
25878 GGTTGAAGTCTAATAT
1 GGTTGAAGTCAAATAT
25894 ACCTATCGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.34
Consensus pattern (16 bp):
GGTTGAAGTCAAATAT
Found at i:26160 original size:27 final size:29
Alignment explanation
Indices: 26130--26201 Score: 112
Period size: 31 Copynumber: 2.5 Consensus size: 29
26120 CTCTTCTAAT
26130 AAATAAACCCTCTC-TTTTTTT-TGCCAA
1 AAATAAACCCTCTCTTTTTTTTGTGCCAA
26157 AAATAAACCCTCTCCTTTTTTTTGGTGCCAA
1 AAATAAACCCTCT-CTTTTTTTT-GTGCCAA
26188 AAATAAACCCTCTC
1 AAATAAACCCTCTC
26202 CTAAAAAACC
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
27 13 0.32
28 1 0.02
29 7 0.17
30 1 0.02
31 19 0.46
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
AAATAAACCCTCTCTTTTTTTTGTGCCAA
Found at i:34468 original size:15 final size:15
Alignment explanation
Indices: 34448--34477 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34438 CTTTAGCTTC
34448 TATGTTGCTTTGTAA
1 TATGTTGCTTTGTAA
34463 TATGTTGCTTTGTAA
1 TATGTTGCTTTGTAA
34478 ATATTTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.20, T:0.53
Consensus pattern (15 bp):
TATGTTGCTTTGTAA
Found at i:36147 original size:18 final size:18
Alignment explanation
Indices: 36124--36167 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
36114 TGCAGGTGGA
36124 GATGATGAAGAAGATTAT
1 GATGATGAAGAAGATTAT
*
36142 GATGATGATGAAGATTAT
1 GATGATGAAGAAGATTAT
36160 GATGATGA
1 GATGATGA
36168 GTATGAAGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (18 bp):
GATGATGAAGAAGATTAT
Found at i:46799 original size:48 final size:49
Alignment explanation
Indices: 46733--46833 Score: 177
Period size: 48 Copynumber: 2.1 Consensus size: 49
46723 TAACAGAAAC
46733 AAAGCATAAAAATGAAATCAGTTAAGTCATGAAATCAAAAGCGATGAGAG
1 AAAGCAT-AAAATGAAATCAGTTAAGTCATGAAATCAAAAGCGATGAGAG
*
46783 AAAGCAT-AAATGAAATCAGTTAAGTGATGAAATCAAAAGCGATGAGAG
1 AAAGCATAAAATGAAATCAGTTAAGTCATGAAATCAAAAGCGATGAGAG
46831 AAA
1 AAA
46834 AGAAAACAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
48 43 0.86
50 7 0.14
ACGTcount: A:0.52, C:0.09, G:0.21, T:0.18
Consensus pattern (49 bp):
AAAGCATAAAATGAAATCAGTTAAGTCATGAAATCAAAAGCGATGAGAG
Found at i:55427 original size:36 final size:36
Alignment explanation
Indices: 55360--55436 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
55350 CACTTCATCA
* *
55360 TCATCATCATCTTCTTCTTCCTCTCCGTCGTCGTCG
1 TCATCATCATCTTCTCCGTCCTCTCCGTCGTCGTCG
*
55396 TCATCATCATCTTCTCCGTCGTCATCTTCGTCGTCGTCG
1 TCATCATCATCTTCTCCGTC--C-TCTCCGTCGTCGTCG
55435 TC
1 TC
55437 GTCTTCTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 18 0.51
38 1 0.03
39 16 0.46
ACGTcount: A:0.09, C:0.38, G:0.13, T:0.40
Consensus pattern (36 bp):
TCATCATCATCTTCTCCGTCCTCTCCGTCGTCGTCG
Found at i:55428 original size:39 final size:39
Alignment explanation
Indices: 55357--55436 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 39
55347 CTGCACTTCA
* * * *
55357 TCATCATCATCATCTTCTTCTTCCTCTCCGTCGTCGTCG
1 TCATCATCATCATCTCCGTCGTCATCTCCGTCGTCGTCG
* *
55396 TCATCATCATCTTCTCCGTCGTCATCTTCGTCGTCGTCG
1 TCATCATCATCATCTCCGTCGTCATCTCCGTCGTCGTCG
55435 TC
1 TC
55437 GTCTTCTTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.10, C:0.38, G:0.12, T:0.40
Consensus pattern (39 bp):
TCATCATCATCATCTCCGTCGTCATCTCCGTCGTCGTCG
Found at i:55433 original size:18 final size:18
Alignment explanation
Indices: 55387--55442 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
55377 TTCCTCTCCG
* *
55387 TCGTCGTCGTCATCATCA
1 TCGTCGTCGTCGTCATCT
*
55405 TCTTC-TCCGTCGTCATCT
1 TCGTCGT-CGTCGTCATCT
*
55423 TCGTCGTCGTCGTCGTCT
1 TCGTCGTCGTCGTCATCT
55441 TC
1 TC
55443 TTCTTCCTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.07, C:0.36, G:0.18, T:0.39
Consensus pattern (18 bp):
TCGTCGTCGTCGTCATCT
Found at i:55436 original size:21 final size:21
Alignment explanation
Indices: 55385--55445 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
55375 TCTTCCTCTC
*
55385 CGTCGTCGTCGTCATCATCAT
1 CGTCGTCGTCGTCATCTTCAT
* *
55406 CTTC-TCCGTCGTCATCTTCGT
1 CGTCGT-CGTCGTCATCTTCAT
*
55427 CGTCGTCGTCGTCTTCTTC
1 CGTCGTCGTCGTCATCTTC
55446 TTCCTCTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.07, C:0.36, G:0.18, T:0.39
Consensus pattern (21 bp):
CGTCGTCGTCGTCATCTTCAT
Found at i:56744 original size:29 final size:29
Alignment explanation
Indices: 56702--56760 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
56692 ACCTCTTCTT
56702 CTCTTTTTTTTTCTTTGGATAATTTACTG
1 CTCTTTTTTTTTCTTTGGATAATTTACTG
56731 CTCTTTTTTTTTCTTTGGATAATTTACTG
1 CTCTTTTTTTTTCTTTGGATAATTTACTG
56760 C
1 C
56761 GTGGGTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.14, C:0.15, G:0.10, T:0.61
Consensus pattern (29 bp):
CTCTTTTTTTTTCTTTGGATAATTTACTG
Found at i:56770 original size:30 final size:29
Alignment explanation
Indices: 56707--56771 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
56697 TTCTTCTCTT
**
56707 TTTTTTTCTTTGGATAATTTACTGCTCTT
1 TTTTTTTCTTTGGATAATTTACTGCTCGG
*
56736 TTTTTTTCTTTGGATAATTTACTGCGTGGG
1 TTTTTTTCTTTGGATAATTTACTGC-TCGG
56766 TTTTTT
1 TTTTTT
56772 CTACTTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 25 0.78
30 7 0.22
ACGTcount: A:0.12, C:0.11, G:0.15, T:0.62
Consensus pattern (29 bp):
TTTTTTTCTTTGGATAATTTACTGCTCGG
Found at i:62813 original size:21 final size:21
Alignment explanation
Indices: 62787--62830 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
62777 TTTTGCTGAA
62787 TTGCTAAATACCGCCCCCCTT
1 TTGCTAAATACCGCCCCCCTT
** *
62808 TTGCTACTTACCGCCTCCCTT
1 TTGCTAAATACCGCCCCCCTT
62829 TT
1 TT
62831 TACACTTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.14, C:0.41, G:0.09, T:0.36
Consensus pattern (21 bp):
TTGCTAAATACCGCCCCCCTT
Found at i:63058 original size:10 final size:10
Alignment explanation
Indices: 63045--63118 Score: 66
Period size: 10 Copynumber: 7.7 Consensus size: 10
63035 TTTTATTTTT
63045 TTAATTATTA
1 TTAATTATTA
63055 TTAATTATTA
1 TTAATTATTA
63065 --AATTATTA
1 TTAATTATTA
*
63073 TTAATT-TAAA
1 TTAATTAT-TA
*
63083 TT-GTTATTA
1 TTAATTATTA
*
63092 TTAATTATAA
1 TTAATTATTA
*
63102 TTAATAATTA
1 TTAATTATTA
*
63112 ATAATTA
1 TTAATTA
63119 AAAAATAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
8 8 0.16
9 6 0.12
10 36 0.72
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (10 bp):
TTAATTATTA
Found at i:63061 original size:7 final size:7
Alignment explanation
Indices: 63051--63118 Score: 58
Period size: 7 Copynumber: 10.6 Consensus size: 7
63041 TTTTTTAATT
63051 ATTATTA
1 ATTATTA
63058 ATTATTA
1 ATTATTA
63065 A--ATT-
1 ATTATTA
63069 ATTATTA
1 ATTATTA
*
63076 ATT-TAA
1 ATTATTA
*
63082 ATTGTT-
1 ATTATTA
63088 ATTATTA
1 ATTATTA
63095 ATTA-TA
1 ATTATTA
*
63101 ATTAATA
1 ATTATTA
*
63108 ATTAATA
1 ATTATTA
63115 ATTA
1 ATTA
63119 AAAAATAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
4 1 0.02
5 3 0.06
6 19 0.37
7 29 0.56
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (7 bp):
ATTATTA
Found at i:63103 original size:19 final size:19
Alignment explanation
Indices: 63048--63118 Score: 67
Period size: 19 Copynumber: 3.7 Consensus size: 19
63038 TATTTTTTTA
63048 ATTATTATTAATTATTAA--
1 ATTATTATTAATTA-TAATT
63066 ATTATTATTAATT-TAAATT
1 ATTATTATTAATTAT-AATT
*
63085 GTTATTATTAATTATAATT
1 ATTATTATTAATTATAATT
* *
63104 AATAATTAATAATTA
1 -ATTATTATTAATTA
63119 AAAAATAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 13 0.30
19 16 0.36
20 12 0.27
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (19 bp):
ATTATTATTAATTATAATT
Found at i:78947 original size:26 final size:26
Alignment explanation
Indices: 78843--80103 Score: 1764
Period size: 26 Copynumber: 48.2 Consensus size: 26
78833 ATTACTTGTG
*
78843 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* *
78869 TTTTCAGTAGGGGCTCATATAGTTGCA
1 TATTCAGTA-GGGCACATATAGTTGCA
*
78896 TATTCAGTAGGGGCTCATATAGTTGCA
1 TATTCAGTA-GGGCACATATAGTTGCA
*
78923 TATTCAGTAAGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
78949 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
78975 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79001 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79027 TATTCAGTAGGGGCACATATAGTTGCA
1 TATTCAGTA-GGGCACATATAGTTGCA
*
79054 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79080 TATTCAGTAGGGGCACATATAGTTGCA
1 TATTCAGTA-GGGCACATATAGTTGCA
79107 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79133 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* *
79159 TATTTAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79185 TATTCAGATATTCAGTAGGCTCATATAGTTGCA
1 TATTCAG----T-AG--GGCACATATAGTTGCA
* * *
79218 TATTCAGTAGTGCTCATATAGTAGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* * *
79244 TATTCAGTAGTGCTCATTTAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79270 TACTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79296 TATTCAGTAGGGCACATATAGTTACA
1 TATTCAGTAGGGCACATATAGTTGCA
* * *
79322 TATTCAGTAGGTCCCATATAGTTTCA
1 TATTCAGTAGGGCACATATAGTTGCA
79348 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79374 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79400 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79426 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79452 TATTCAGTAGGGCCCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79478 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79504 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79530 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79556 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79582 TATTCAGTAGGACACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79608 TATTCAGTAGGACACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79634 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79660 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79686 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79712 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79738 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79764 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* *
79790 TATTTAGTAGAGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
79816 TATTCAGTAGGACACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* *
79842 TATTCAGTAGGGCTTTGCATATTCAGTAGGGCA
1 TATTCAGTAGGGC---ACATA-T-AGT--TGCA
* * * *
79875 CA-T-A-TAGTTGCATAT-TCAGTAGGGC-
1 TATTCAGTAG-GGCACATAT-AGT--TGCA
*
79900 TCA-T-A-TAGTTG--CATATAGTTGCA
1 T-ATTCAGTAG-GGCACATATAGTTGCA
*
79923 TATTCAGTAGGGCACATATCGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
79949 TATTCAGTAGGG----T-T--TTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
**
79968 TATTCAGTAGGATACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
* *
79994 TATTCAGTAGGACTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
*
80020 TATTCAGTAGGGCTCATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
80046 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
80072 TATTCAGTAGGGCACATATAGTTGCA
1 TATTCAGTAGGGCACATATAGTTGCA
80098 TATTCA
1 TATTCA
80104 CTATTCTAAT
Statistics
Matches: 1139, Mismatches: 63, Indels: 66
0.90 0.05 0.05
Matches are distributed among these distances:
19 16 0.01
21 1 0.00
22 4 0.00
23 3 0.00
24 8 0.01
25 4 0.00
26 951 0.83
27 102 0.09
28 4 0.00
29 5 0.00
30 5 0.00
31 8 0.01
32 1 0.00
33 27 0.02
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.33
Consensus pattern (26 bp):
TATTCAGTAGGGCACATATAGTTGCA
Found at i:79211 original size:33 final size:34
Alignment explanation
Indices: 79158--79224 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 34
79148 ATATAGTTGC
*
79158 ATATTTAGTAGGGCTCATATAGTTGCATATTCAG
1 ATATTCAGTAGGGCTCATATAGTTGCATATTCAG
79192 ATATTCAGTA-GGCTCATATAGTTGCATATTCAG
1 ATATTCAGTAGGGCTCATATAGTTGCATATTCAG
79225 TAGTGCTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 23 0.72
34 9 0.28
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.37
Consensus pattern (34 bp):
ATATTCAGTAGGGCTCATATAGTTGCATATTCAG
Found at i:79861 original size:19 final size:19
Alignment explanation
Indices: 79837--79873 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
79827 ACACATATAG
79837 TTGCATATTCAGTAGGGCT
1 TTGCATATTCAGTAGGGCT
79856 TTGCATATTCAGTAGGGC
1 TTGCATATTCAGTAGGGC
79874 ACATATAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (19 bp):
TTGCATATTCAGTAGGGCT
Found at i:79916 original size:10 final size:10
Alignment explanation
Indices: 79901--79925 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79891 CAGTAGGGCT
79901 CATATAGTTG
1 CATATAGTTG
79911 CATATAGTTG
1 CATATAGTTG
79921 CATAT
1 CATAT
79926 TCAGTAGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (10 bp):
CATATAGTTG
Found at i:81498 original size:648 final size:648
Alignment explanation
Indices: 80609--82611 Score: 2897
Period size: 648 Copynumber: 3.1 Consensus size: 648
80599 ATGTCGGCGC
* * * **
80609 CCCAAAACGCGTTTTTAGCCCCAAAAGCGTG--A--TAGTACACGATTTCAGCTAAAAACTGATT
1 CCCAAAACGCGTTTTTAGCCCAAAAATCGTGTTAGTTAGTACACGATTTCGGCTAAAAACTGACC
* * * * * * *
80670 TAAGAAGTTTTTTTTTTGAATTTTTTTCGTCAAAATACTCTGAAAATTTATATAATTGAACGCCA
66 TGAG-AGGTTTTTTTCTGAA-TTTTTT-GCCAAAATACTCAGAAAAATTATATAATTCAACGCCA
* *
80735 AAAACATTGACGGGCTTTTCA-AATTCTAATATCGTTTTTCAAGTTTTTTTCCGAATTAATTTCT
128 AAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-TTTTTTTCCGAATTAATTTCT
* * * *
80799 ATTTAAAGCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATCTGGTTGAGGT
192 AATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGAT
*
80864 TTAGTTCGATAAGTATAGATATTTCAAGGACGCTTTGTGCCAAAAATCATGCAAAATTGAGTCGG
257 TTAGTTCGATAAGTATAGATATTTCAAGGACACTTTGTGCCAAAAATCATGCAAAATTGAGTCGG
* * * * *
80929 GCTCTGGAATGCGTTTTTAGCCAAAAATCGTGAT-G-AGTACACGATTTCGGCTAAAATTTTGCA
322 GCTCCGGAATGTGTTTTTGGCGAAAAACCGTGATGGTAGTACACGATTTCGGCTAAAATTTTGCA
* *
80992 AAAACTGACCCGAAAAGTTTTTCCTCAAATTTTTTACCACAATACTAGGATAAAATATATAATTT
387 AAAACTGACCCGAAAAGTTTTTCCTCAAATTTTTTACCACAATACTAGGAAAAAATATATAATTC
* *
81057 AACACCAAAAGAAATTAAGGGTTTTTCACGCTTTTAATACCGATTTTCCATTTTTTTTTCGAATT
452 AACGCCAAAA-AAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCA-TTTTTTTTCGAATT
* * * *
81122 TTTTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCT
515 TATTTATTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCT
* * *
81187 GAGATTTGGTTAAATGAATATAGATATTTCAAGAAGTCATTCCGCCTAAA-A-TATAACTGAGCC
580 GAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAACAGTATAACTGAGCC
*
81250 GGGGC
645 -GGGA
*
81255 CCCAAAACGCGTTTTTAGGCCAAAAATCGT-TATAGTTAGTACACGATTTCGGCTAAAAACTGAC
1 CCCAAAACGCGTTTTTAGCCCAAAAATCGTGT-TAGTTAGTACACGATTTCGGCTAAAAACTGAC
* * * *
81319 CTGAGGGGTTTTTTTCTGAATTTTTTGCCAAAATACTCGGAAAAAATATATAATTCAACGCAAAA
65 CTGAGAGGTTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTATATAATTCAACGCCAAA
* *
81384 AAGAATGATGGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTTTCCGAATTAATTTCTAA
130 AAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-TTTTTTTCCGAATTAATTTCTAA
81449 TTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTT
194 TTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTT
* * * * * * *
81514 AATTCG--AAGAAAATATAACTTAAAGGGACTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGG
259 AGTTCGATAAGTATAGAT-ATTTCAA-GGACACTTTGTGCCAAAAATCATGCAAAATTGAGTCGG
*
81577 GCTCCGGAATGTGTTTTTGGCGAAAAACCGTGCTGGTTAGTACACGATTTCGGCTAAAATTTT-C
322 GCTCCGGAATGTGTTTTTGGCGAAAAACCGTGATGG-TAGTACACGATTTCGGCTAAAATTTTGC
* * *
81641 AAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCGCAATGCTCA-GAAAAAATATATAA
386 -AAAAACTGACCCGAAAAGTTTTTCCTCAAATTTTTTACCACAATACT-AGGAAAAAATATATAA
81705 TTCAACGCC-AAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAAT
449 TTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAAT
*
81769 TTATTTATTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCAACTGTGGC
514 TTATTTATTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGC
** *
81834 TGAGATTTAATTAGATGAATATAGATATTTCAAGAAGTCTTTCTACCTAAAATCATGTATAACTG
579 TGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCT-AAA-CA-GTATAACTG
81899 AGCCGGGA
641 AGCCGGGA
* *
81907 CCCAAAACGCGTTTTTAGCCCAAAAACTCGTGTTAGTTAGTACACGATTTCGCCTAAAAACTCAC
1 CCCAAAACGCGTTTTTAGCCCAAAAA-TCGTGTTAGTTAGTACACGATTTCGGCTAAAAACTGAC
* *
81972 CTGAGAAGTTTTTTTCTGAATTTTTCGCCAAAATACTCAGAAAAATTATATAATTCAACGCCAAA
65 CTGAGAGGTTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTATATAATTCAACGCCAAA
* **
82037 AAGATTGACGGGGCCTTTCACTATAGTAATATCGTTTTTCAATTTTTTTCCGAATTAATTTCTAA
130 AAGATTGAC-GGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTTCCGAATTAATTTCTAA
82102 TTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTT
194 TTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTT
*
82167 AGTTCGATGAA-TATAGATATTTCAGGGACACTTTGTG-C------CATGCAAAATT--GTCGGG
259 AGTTCGAT-AAGTATAGATATTTCAAGGACACTTTGTGCCAAAAATCATGCAAAATTGAGTCGGG
* * *
82222 CTCCAGAATGTGTATTTGGCGAAAAACCGTGATGGTTAGTACACGACTTCGGCTAAAATTTTGCA
323 CTCCGGAATGTGTTTTTGGCGAAAAACCGTGATGG-TAGTACACGATTTCGGCTAAAATTTTGCA
* * * *
82287 AAAACTGACACGAAAAGTTTTTCCTC-AATTTTGTTATCACAACACTCGGAAAAAATATATAATT
387 AAAACTGACCCGAAAAGTTTTTCCTCAAATTTT-TTACCACAATACTAGGAAAAAATATATAATT
*
82351 CAACGCCATAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAATTT
451 CAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAATTT
82416 ATTTATTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTG
516 ATTTATTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTG
82481 AGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAGTCATGTATAACTGAG
581 AGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAA--CA-GTATAACTGAG
82546 CCGGGA
643 CCGGGA
* * * *
82552 CCCAAAACGCGTTTTTAGCCCAAAAACCGTGTTAGTTAGTACATGATTTTGACTAAAAAC
1 CCCAAAACGCGTTTTTAGCCCAAAAATCGTGTTAGTTAGTACACGATTTCGGCTAAAAAC
82612 GAATTAATTT
Statistics
Matches: 1229, Mismatches: 99, Indels: 60
0.89 0.07 0.04
Matches are distributed among these distances:
643 5 0.00
644 155 0.13
645 211 0.17
646 45 0.04
647 54 0.04
648 296 0.24
649 54 0.04
650 33 0.03
651 90 0.07
652 30 0.02
653 216 0.18
654 34 0.03
655 4 0.00
656 2 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (648 bp):
CCCAAAACGCGTTTTTAGCCCAAAAATCGTGTTAGTTAGTACACGATTTCGGCTAAAAACTGACC
TGAGAGGTTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTATATAATTCAACGCCAAAA
AGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTTCCGAATTAATTTCTAATT
AAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTTAG
TTCGATAAGTATAGATATTTCAAGGACACTTTGTGCCAAAAATCATGCAAAATTGAGTCGGGCTC
CGGAATGTGTTTTTGGCGAAAAACCGTGATGGTAGTACACGATTTCGGCTAAAATTTTGCAAAAA
CTGACCCGAAAAGTTTTTCCTCAAATTTTTTACCACAATACTAGGAAAAAATATATAATTCAACG
CCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAATTTATTTA
TTTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATT
TGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAACAGTATAACTGAGCCGGGA
Found at i:82016 original size:320 final size:319
Alignment explanation
Indices: 80563--82611 Score: 1601
Period size: 320 Copynumber: 6.3 Consensus size: 319
80553 AACGCGTTTT
* * *
80563 TATTTCAAGAAGTCTTTCTACATAAAATCATGAATAA-T--GTCGGCGCCCCAAAACGCGTTTTT
1 TATTTCAAGAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGG-G-CCCAAAACGCGTTTTT
* * ** * *
80625 AGCCCCAAAAGCGTG--A--TAGTACACGATTTCAG-CTAAAAACTGATTTAAGAAGTTTTTTTT
64 AGCCCAAAAACCGTGTTAGTTAGTACACGATTTC-GCCTAAAAACTGACCTGAGAAG--TTTTTC
* * * ** * *
80685 TTGAATTTTTTTCGTCAAAATACTCTGAAAATTTATATAATTGAACGCCAAAAACATTGACGGGC
126 CTGAATTTTTTAC--CAAAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-ATT-AAGGGC
* * * * * *
80750 TTTTCA-AATTCTAATATCGTTTTTCAAGTTTTTTTCCGAATTAATTTCTATTTAAAGCGAAAAA
187 TTTTCACGATTCTAATACCGATTTTCAA-TTTTTTTTCGAATTAATTTCTAATTAAATCGAAAAA
* * * * * * *
80814 AGATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATCTGGTTGAGGTTTAGTTCGAT-AAGT
251 AGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAA-T
80878 ATAGA
315 ATAGA
* * * * * * *** *
80883 TATTTCAAGGACG-CTTTGTGCCAAAAATCATGCAAAATTGAGTCGGGCTCTGGAATGCGTTTTT
1 TATTTCAA-GAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGGGC-CCAAAACGCGTTTTT
* * * * *
80947 AG-CCAAAAATCGTG--A-TGAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA
64 AGCCCAAAAACCGTGTTAGTTAGTACACGATTTC-GC-------CT--AAAAACTGACCTGAGAA
* * * * *
81008 GTTTTTCCTCAAATTTTTTACCACAATACT-AGGATAAAATATATAATTTAACACCAAAAGAAAT
119 GTTTTTCCT-GAATTTTTTACCAAAATACTCA-GAAAAAATATATAATTCAACGCC-AAA-AAAT
* * * * *
81072 TAAGGGTTTTTCACGCTTTTAATACCGATTTTCCATTTTTTTTTCGAATT--TTTTTAATTAAAT
180 TAAGGGCTTTTCACGATTCTAATACCGATTTT-CAATTTTTTTTCGAATTAATTTCTAATTAAAT
* * * * *
81135 CGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTATGGCTGAGATTTGGTTAA
244 CGAAAAAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAG
81200 ATGAATATAGA
309 ATGAATATAGA
* * *
81211 TATTTCAAGAAGTCATTCCGCCT-AAA--A--TATAACTGAGCCGGGGCCCCAAAACGCGTTTTT
1 TATTTCAAGAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTC-GGG-CCCAAAACGCGTTTTT
* * * ** *
81271 AGGCCAAAAATCGT-TATAGTTAGTACACGATTTCGGCTAAAAACTGACCTGAGGGGTTTTTTTC
64 AGCCCAAAAACCGTGT-TAGTTAGTACACGATTTCGCCTAAAAACTGACCTGAGAAG-TTTTTCC
* * * * *
81335 TGAATTTTTTGCCAAAATACTCGGAAAAAATATATAATTCAACGCAAAAAAGAATGATGGGCTTT
127 TGAATTTTTTACCAAAATACTCAGAAAAAATATATAATTCAACGC-CAAAA-AATTAAGGGCTTT
* * *
81400 TCACTATTCTAATATCGTTTTTCAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAAAAAGA
190 TCACGATTCTAATACCGATTTTCAATTTTTTTT-CGAATTAATTTCTAATTAAATCGAAAAAAGA
* * * * * * * * *
81465 TTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTTAATTCGAAGAAAATAT
254 TTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAG
81530 A
319 A
* * * * * * * * * ** * *
81531 -ACTTAAAGGGACTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGGGCTCCGGAATGTGTTTTT
1 TATTTCAA-GAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGGGC-CCAAAACGCGTTTTT
* * * * * * *
81595 -GGCGAAAAACCGTGCTGGTTAGTACACGATTTCGGCTAAAATTTTCAAAAAACTGACCCGAAAA
64 AGCCCAAAAACCGTGTTAGTTAGTACACGATTTC-GC---------CTAAAAACTGACCTGAGAA
* ** *
81659 GTTTTTCCTCAATTTTTTTACCGCAATGCTCAGAAAAAATATATAATTCAACGCCAAAAAATTAA
119 GTTTTTCCTGAA-TTTTTTACCAAAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTAA
* * * * *
81724 GGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAATTTA-TT-TATTTAAATCGAA
183 GGGCTTTTCACGATTCTAATACCGATTTTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAA
** *
81787 TCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT-CAACTGTGGCTGAGATTTAATTAGATG
248 AAAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAA-TGTGGCTGAGATTTAGTTAGATG
81851 AATATAGA
312 AATATAGA
* *
81859 TATTTCAAGAAGTCTTTCTACCTAAAATCATGTATAACTGAGCCGGGACCCAAAACGCGTTTTTA
1 TATTTCAAGAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGGG-CCCAAAACGCGTTTTTA
* *
81924 GCCCAAAAACTCGTGTTAGTTAGTACACGATTTCGCCTAAAAACTCACCTGAGAAGTTTTTTTCT
65 GCCCAAAAAC-CGTGTTAGTTAGTACACGATTTCGCCTAAAAACTGACCTGAGAAG-TTTTTCCT
** * * *
81989 GAATTTTTCGCCAAAATACTCAGAAAAATTATATAATTCAACGCCAAAAAGATTGACGGGGCCTT
128 GAATTTTTTACCAAAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-ATT-A-AGGGCTTT
* ** * * *
82054 TCACTATAGTAATATCGTTTTTCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAAAAAGAT
190 TCACGATTCTAATACCGATTTTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAAAAAGAT
* * * * *
82119 TTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTTAGTTCGATGAATATAGA
255 TAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGA
* * ** * * * * * *
82184 TATTTCAGGGACACTTTGTGCC----ATGCA---A-AA-T-TGTCGGGCTCCAGAATGTGTATTT
1 TATTTCAAGAAGTCTTTCTGCCTAAAAT-CATGTATAACTGAGTCGGGC-CCAAAACGCGTTTTT
* * * * * * *
82239 -GGCGAAAAACCGTGATGGTTAGTACACGACTTCGGCTAAAATTTTGCAAAAACTGACAC-GAAA
64 AGCCCAAAAACCGTGTTAGTTAGTACACGATTTC-GC-------CT--AAAAACTGAC-CTGAGA
* * * * *
82302 AGTTTTTCCTCAATTTTGTTATCACAACACTCGGAAAAAATATATAATTCAACGCCATAAAAATT
118 AGTTTTTCCTGAATTTT-TTACCAAAATACTCAGAAAAAATATATAATTCAACGCCA-AAAAATT
* * * * *
82367 AAGGGTTTTTCACGCTTCTAATACCGATTTTCCATTTTTTTTCGAATTTA-TT-TATTTAAATCG
181 AAGGGCTTTTCACGATTCTAATACCGATTTTCAATTTTTTTTCGAATTAATTTCTAATTAAATCG
** * *
82430 AATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTTGGTTAGAT
246 AAAAAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGAT
82495 GAATATAGA
311 GAATATAGA
* *
82504 TATTTCAAGAAGTCTTTCTGCCTAAAGTCATGTATAACTGAGCCGGGACCCAAAACGCGTTTTTA
1 TATTTCAAGAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGGG-CCCAAAACGCGTTTTTA
* * *
82569 GCCCAAAAACCGTGTTAGTTAGTACATGATTTTGACTAAAAAC
65 GCCCAAAAACCGTGTTAGTTAGTACACGATTTCGCCTAAAAAC
82612 GAATTAATTT
Statistics
Matches: 1347, Mismatches: 286, Indels: 192
0.74 0.16 0.11
Matches are distributed among these distances:
314 20 0.01
315 11 0.01
316 16 0.01
317 12 0.01
318 88 0.07
319 13 0.01
320 265 0.20
321 35 0.03
322 70 0.05
323 96 0.07
324 83 0.06
325 114 0.08
326 4 0.00
327 13 0.01
328 212 0.16
329 73 0.05
330 94 0.07
331 51 0.04
332 26 0.02
333 51 0.04
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (319 bp):
TATTTCAAGAAGTCTTTCTGCCTAAAATCATGTATAACTGAGTCGGGCCCAAAACGCGTTTTTAG
CCCAAAAACCGTGTTAGTTAGTACACGATTTCGCCTAAAAACTGACCTGAGAAGTTTTTCCTGAA
TTTTTTACCAAAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTAAGGGCTTTTCACGA
TTCTAATACCGATTTTCAATTTTTTTTCGAATTAATTTCTAATTAAATCGAAAAAAGATTAAGAT
GCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGA
Found at i:82772 original size:204 final size:203
Alignment explanation
Indices: 82422--82812 Score: 487
Period size: 204 Copynumber: 1.9 Consensus size: 203
82412 ATTTATTTAT
** * *
82422 TTAAATCGAATCAAGATTAAGATGCTCGTAAAAACAAATCCTTAAATCCACTGTGGCTGAGATTT
1 TTAAATCGAAAAAAAATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* * * * * *
82487 GGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAGTCATGTATAACTGAGCCGGGA
66 AGTTAGATGAATATAGATATTTCAAGAACTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGA
* * *
82552 CCCAAAACGCGTTTTTAGCCCAAAAACCGTGTTAGTTAGTACATGATTTTGACTAAAAACGAATT
131 CCCAAAACGCGTTTTTAG-CCAAAAACCGTGATAGTTAGTACACGATTTCGACTAAAAACGAATT
82617 AATTTCTAA
195 AATTTCTAA
* * * *
82626 TTAAATCGAAAAAAAATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGTTGAGATTT
1 TTAAATCGAAAAAAAATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
* ** * * *
82691 AGTTCGATGAATATAGATATTTCAAGGCCTCTTTGTGCCAAAAATCATGCAAAATTGAGTCGGG-
66 AGTTAGATGAATATAGATATTTCAAGAACTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGA
** * * * * *
82755 CTCCGGAATGTGTTTTTAGCGAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAA
131 C-CCAAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGACTAAAA
82813 TTTTGCAAAA
Statistics
Matches: 156, Mismatches: 30, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
203 34 0.22
204 122 0.78
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (203 bp):
TTAAATCGAAAAAAAATTAAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTT
AGTTAGATGAATATAGATATTTCAAGAACTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGA
CCCAAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGACTAAAAACGAATTA
ATTTCTAA
Found at i:84952 original size:647 final size:650
Alignment explanation
Indices: 82611--87109 Score: 7036
Period size: 647 Copynumber: 7.0 Consensus size: 650
82601 TGACTAAAAA
*
82611 CGAATTAATTTCTAATTAAATCGAAAAAAAATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
* *
82676 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAAGGCCTCTTTGTGCCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
* *
82741 AAAATTGAGTCGGGCTCCGGAATGTGTTTTTAGCGAAAAACCGTGATGGTTAGTACACGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* *
82806 GCTAAAATTTTGCAAAAACTAACCCGAAAAGTTTTTCCTCAATATTTTTACCACAATACTCAGG-
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTC-GGA
* *
82870 AAAAATATATAATTCAACGCCAAAAAAAATTAAGGG-TTTTCAACGCTTCTAATACTGATTTTGC
260 AAAAATATATAATTCAACGCC-AAAAAAATTAAGGGTTTTTC-ACGCTTCTAATACCGATTTTCC
* * * *
82934 TTTTTTTTCAAATTTATTTAATTAAATCGAAATAAGATTAAGATGCTCGTAAAAACGAATCCTTA
323 ATTTTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTA
* * * *
82999 AGTCCACTGTGGCTGAAATTTGATTAGATGAATATAGATATTTC---AA--------GCCTAATA
388 AATCCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAA
*
83053 TCATGTATAACTGAG-CTGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTG--AGTTAATAC
453 TCATGTATAACTGAGTC-GGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTAC
* * *
83115 ACGATTTTGGCTAAAAACTGACCTGAGAAGTTTTTTTCCGAATTTTTTGCCAAAATACTCA-ACA
517 ACGATTTCGGCTAAAAACTGACCTGAGAAG-TTTTTTCTGAATTTTTTGCCAAAATACTCAGAAA
* *
83179 AATATATATATTTCAATGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAAT
581 AAT-TATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-
83244 TATTTTTC
644 T-TTTTTC
83252 CGAATTAATTTCTAATTAAATC-AAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
* * * *
83316 AGGTGGTTGAGATTTAATTCGATGAATATAGATATTTCAGGGGCTCTTTGCGCCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
*
83381 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGTCAAAAACCGTGA----TAGTACACGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
*
83442 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTTCCACAATACTCGGAA
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
* *
83507 AAAATATATAATTTAACGCCAAAAAAATTAAGGGTTTTTCAGGCTTCTAATACCGATTTTCCATT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
* *
83572 TTTTTCGAATTTATTTAATTAAATGGAAACAAGATTAAGATGCTCGTACAAACAAATCCTTAAAT
326 TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
* * *
83637 CCACTGTGGCTGTGATTTGGTTAGATGAATATAGATATTTTAAGAAGTCTTTCTGCCTAAAATCT
391 CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
* * *
83702 TGTATTACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCATGATAGTTAGTACATG-
456 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
** * *
83766 TGTTCGGCTAAAAACTGACCT-AGGGTGTTTTTTTCTGAATTTTTAGCCAAAATACTCAGAAATA
521 T-TTCGGCTAAAAACTGACCTGA-GAAG-TTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAA
* *
83830 TTATATAATTCAACGCCAAAAAGATTGACGGACTTTTCACTATTCGAATATCGTTTTTCAATTTT
583 TTATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-TTT
83895 TTTC
647 TTTC
*
83899 CGAAATAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
*
83964 ATGTGGTTGAGATTTAGTTCGATGAATATAAATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
* * * * * *
84029 AAAATT--GTCGGGCTCCAGAATGTGTTTTTAACAAAAAACCGTGA---TAAGTACATGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * * *
84089 GCTAAAATTTTGCAAAAACTGACACGAAAAGTTTTTCCTCAATTTTGTTATCACAAAACTCGGAA
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
* *
84154 AAAATATATAATTCAACGCCATAAAAATTAAGGGTTTTTCACGCTTCTAATACCAATTTTCC-TT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
* *
84218 TTTTT-GAATTTTTTTAAATAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
326 TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
*
84282 CCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
391 CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
84347 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
456 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
* * *
84412 TTTCGGCCAAAAACTGACTTGAGAAG-TTTTTCTGAATTTTTCGCCAAAATACTCAGAAAAATTA
521 TTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTA
* *
84476 TATAATTCAACGCCAAAAACATTGACGGGCCTTTCACTATTCTAATATCGTTTTTCAATTTTTTC
586 TATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTC
84541 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
84606 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
*
84671 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAACCAAAAACCGTGATGGTTAGTACACGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* *
84736 GCTAAAATTTTGCAAAAACTGACCCTAAAAGTTTTTCCTCAATTTTTTTACCACAATACTGGGAA
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
* * * *
84801 AAAATATATAATTCAACGCC-AAAAAATCAATGGTTTTTCAAGCTTCTAATATCGA-TTTCCATT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
**
84864 TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAACGCAAATCCTTAAAT
326 TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
* *
84929 CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCATGAAGTCTTTATGCCTAAAATCA
391 CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
* * *
84994 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGTCCAAAAACCATGATAGTTAGTACATGA
456 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
*
85059 TTTCGGCTAAAAACTGACCTGA-ACAG-TTTTTCTGAATTTTTTGCCAAAATACTCGGAAAAATT
521 TTTCGGCTAAAAACTGACCTGAGA-AGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATT
* * **
85122 ATATAATTTAACGCCAAAAAGGTTGACATGCTTTTCACTATTCTAATATCGTTTTTCAATTCTTT
585 ATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATT-TTT
85187 TC
649 TC
* *
85189 CGAATTAATTTCTAATTAAATCG-AAAAGGATTTAGATGCTTGTAAAAACAAATCCTTATATCTA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
*
85253 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCCTTGTGCCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
* *
85318 AAAATTGAGTCGGGATCCGGAATGCGTTTTTCGCCAAAAACCGTGATGGTTAGTACACGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * ** * *
85383 GATAAAATTTTACGTAAACTAACCCGAAAAGTTTTTCCTCAATTTTTTTACGACAATACTCGGAA
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
85448 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
* *
85513 TTTTTCGAATTTATTTAATTAAATCGAAACAACATTAAGATGCTCGTAAACACAAATCCTTAAAT
326 TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
* * ** *
85578 CCACTGTGGCTGAGATCTGGTTAAATGAATATAGATATTTCAAGAAGTCTTTAAGCCTAAAATCT
391 CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
* *
85643 TGTATAACTGAGTCGGGGCCGCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACATGA
456 TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
*
85708 TTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAAATA
521 TTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTA
*
85773 TATAATTCAACGCCAAAACGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-TTTTTC
586 TATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTC
* *
85837 CGAATTAATTTCTAATTAAATTGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATTCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
* *
85902 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGTCTCTTTGTGTCAAAAATCATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
* * * *
85967 AAAATTGAGTCAGGCTCCGCAATGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACACGATTTCA
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
*
86032 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAA-TTTTTTACCACAATACTCAGAA
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
* * * *
86096 AAAACATATATTTCAACGCCAAAAAAATTAATGGTTTTCCACGCTTCTAATACCGATTTTCCATT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCA-T
* * * *
86161 TTTTTTCGAATTTATTTTATTAAATCCAAATAAGATTAAGATGCTCGTAAAAACAAATCCTTAAT
325 TTTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAA
*
86226 TCCACTGTGGCTGAGATTTGGTTAGATGAAAATAGATATTTC---AA--------GCCTAAAATC
390 TCCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATC
* * *
86280 ATGTATAATTGAG-CTAGGGCCCCAAAACGCGTTTTTAACCCAAAAACCGTGATCA-TTAGTACA
455 ATGTATAACTGAGTC-GGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGAT-AGTTAGTACA
* *
86343 CGATTTCTGCTAAAAACTGACCTAAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAA
518 CGATTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAG-AAAA
* *
86408 AATATATAATTCAACGCCAAAACGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAA-TT
582 ATTATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATTT
86472 TTTC
647 TTTC
*
86476 CGAATTAATTTCTAATTAAATTGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
1 CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
* * *
86541 ATCTGGTTGAGATTTAGTTCAATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATTATGC
66 ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
* *
86606 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCGAAAAACCGTAATGGTTAGTACACGATTTCG
131 AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
* * *
86671 GCTAAAATTTTGCAAAAATTGACCCGAAAAGTTTTTCCTCAATATTTTTACCACAATACTCGGAG
196 GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
86736 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCAAT
261 AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCC-A-
* * *
86801 TTTTTTATTGAATTTATTTAATTAAATTGAAACAAGATTATGATGCTCGTAAAAACAAATCCTTA
324 TTTTTT-TCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTA
* * *
86866 AATCCACTATGGCTGAGATTTGGTTAGAAGAATATGGATATTTCAAGAAGTCTTTCTGCCTAAAA
388 AATCCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAA
* * *
86931 TCATGTATAACTGAGCCGGGTCCCCAAACACGCGTTTTTAGCCCAAAAACCGTGATAATTAGTAC
453 TCATGTATAACTGAGTCGGGGCCCCAAA-ACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTAC
*
86996 ACGATTTCGGC-CAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAA
517 ACGATTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAA
* *
87060 ATTATATAATTCAACGACAACAAGATTGACGGGCTTTTCACTATTCTAAT
582 ATTATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAAT
87110 TAACGGTTTT
Statistics
Matches: 3556, Mismatches: 244, Indels: 105
0.91 0.06 0.03
Matches are distributed among these distances:
635 133 0.04
636 98 0.03
637 1 0.00
638 123 0.03
639 297 0.08
640 221 0.06
641 30 0.01
642 232 0.07
643 90 0.03
644 35 0.01
645 203 0.06
646 136 0.04
647 787 0.22
648 390 0.11
649 517 0.15
650 90 0.03
652 50 0.01
653 79 0.02
654 44 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (650 bp):
CGAATTAATTTCTAATTAAATCGAAAAAAGATTTAGATGCTTGTAAAAACAAATCCTTATATCCA
ATGTGGTTGAGATTTAGTTCGATGAATATAGATATTTCAGGGACTCTTTGTGCCAAAAATCATGC
AAAATTGAGTCGGGCTCCGGAATGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
GCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTTACCACAATACTCGGAA
AAAATATATAATTCAACGCCAAAAAAATTAAGGGTTTTTCACGCTTCTAATACCGATTTTCCATT
TTTTTCGAATTTATTTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACAAATCCTTAAAT
CCACTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCTAAAATCA
TGTATAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCAAAAACCGTGATAGTTAGTACACGA
TTTCGGCTAAAAACTGACCTGAGAAGTTTTTTCTGAATTTTTTGCCAAAATACTCAGAAAAATTA
TATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACTATTCTAATATCGTTTTTCAATTTTTTC
Done.