Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022414.1 Corchorus olitorius cultivar O-4 contig22447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161879

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--2796
322
8.6
322
77
7
2592
35
16
14
33
1.89
1--2796
649
4.3
650
85
5
3371
35
16
14
33
1.89
7187--7266
42
1.9
42
86
0
115
27
16
35
21
1.94
16901--16930
15
2.0
15
93
0
51
70
0
3
26
1.03
18976--19022
23
2.0
23
100
0
94
48
12
12
25
1.77
42540--42576
2
18.5
2
88
0
56
43
0
5
51
1.24
42546--42584
12
3.2
12
92
0
60
38
0
10
51
1.36
51008--51032
2
12.5
2
100
0
50
48
0
0
52
1.00
55471--55512
19
2.2
20
86
4
59
45
0
2
52
1.13
59029--59054
2
13.0
2
100
0
52
50
0
0
50
1.00
71388--71422
2
17.0
2
88
5
52
51
2
0
45
1.16
73021--73107
30
2.9
31
81
5
97
17
26
19
36
1.94
74600--74633
12
2.8
12
90
0
59
41
8
8
41
1.67
80079--80145
27
2.4
27
85
9
91
35
10
5
47
1.62
80079--80148
28
2.5
29
88
6
101
35
10
5
48
1.60
86301--86380
29
2.7
30
84
3
99
28
16
12
42
1.84
86505--86603
31
3.1
31
87
11
130
43
12
14
30
1.81
87217--87456
127
1.9
125
86
5
340
36
10
0
52
1.42
87542--87573
15
2.1
15
94
0
55
78
0
21
0
0.76
87616--87706
32
2.9
32
91
1
148
31
14
12
41
1.82
87856--87926
30
2.3
31
85
2
90
47
11
15
25
1.78
92363--92407
22
2.0
22
95
0
81
33
24
20
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92770--92810
18
2.3
19
79
12
50
19
14
4
60
1.51
94333--94380
23
2.1
23
92
0
78
37
10
14
37
1.81
100151--100229
38
2.3
33
76
19
88
24
22
6
46
1.75
100160--100233
38
1.9
38
94
0
130
22
22
6
47
1.75
105322--105380
21
3.0
19
85
5
73
32
18
11
37
1.87
107007--107054
24
2.0
24
95
0
87
12
35
16
35
1.87
110906--111009
31
3.5
31
90
6
169
17
7
29
45
1.76
120299--120372
29
2.5
29
91
2
121
18
24
17
39
1.92
126083--126195
30
3.8
30
78
0
118
23
55
8
11
1.63
126145--126197
12
4.4
12
76
9
54
28
58
7
5
1.48
126019--126215
72
2.7
72
74
7
193
23
55
7
13
1.62
126214--126561
24
14.0
24
65
14
116
22
54
6
16
1.64
126175--126639
78
6.0
78
87
8
578
22
54
6
16
1.65
126234--126489
54
4.9
53
68
12
177
22
55
6
16
1.64
126403--126560
66
2.4
66
88
0
190
22
55
5
16
1.62
126522--126681
42
3.8
42
69
6
135
21
55
8
14
1.65
126545--126591
24
2.0
24
82
0
58
19
57
6
17
1.60
126514--126674
84
1.9
84
92
0
268
21
55
8
15
1.66
126606--126705
24
4.4
23
72
17
84
25
57
8
10
1.59
126350--126740
150
2.6
150
83
7
444
22
54
7
15
1.66
126606--126731
66
1.9
66
90
0
198
23
57
7
11
1.60
126655--126711
12
4.8
12
73
0
51
29
57
5
7
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126665--126731
30
2.2
30
83
0
80
25
56
5
11
1.57
127966--127998
7
4.7
7
92
0
57
3
27
0
69
1.03
157797--157848
26
2.0
26
96
0
95
25
19
21
34
1.96
160175--160218
16
2.7
15
86
13
61
2
2
13
81
0.88
160664--160734
33
2.2
32
87
7
101
33
21
22
22
1.97

Tables:   1

The End!