Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022415.1 Corchorus olitorius cultivar O-4 contig22448, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16322

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
734--1296
299
1.9
299
89
3
893
36
16
16
31
1.91
2511--2555
12
3.5
12
84
9
54
55
11
2
31
1.47
2963--6478
333
10.6
333
85
3
4451
36
15
15
32
1.89
7520--7566
23
2.0
23
87
0
67
27
6
29
36
1.82
9327--9603
20
13.8
20
67
3
151
29
28
7
35
1.84
9327--9616
40
7.2
40
92
1
454
29
28
7
34
1.84
9327--9616
81
3.6
81
92
0
465
29
28
7
34
1.84
11373--11511
40
3.5
40
86
2
165
35
33
19
12
1.89
13542--16322
331
8.3
332
86
6
3635
35
17
14
31
1.91
15847--15910
32
2.0
32
100
0
128
40
12
12
34
1.81

Tables:   1

The End!