Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022416.1 Corchorus olitorius cultivar O-4 contig22449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80817

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2706--2761
26
2.2
26
100
0
112
64
3
7
25
1.35
2700--2762
26
2.6
24
85
11
92
61
4
9
23
1.45
13105--13151
2
22.5
2
85
12
60
46
2
4
46
1.34
14363--14422
31
1.9
31
89
0
93
36
15
13
35
1.86
17128--17166
18
2.2
18
90
0
60
17
23
10
48
1.78
18179--18222
14
3.2
14
80
3
54
88
6
0
4
0.62
18179--18203
1
25.0
1
100
0
50
100
0
0
0
0.00
22094--22126
12
2.8
12
100
0
66
24
33
9
33
1.87
28752--28800
25
2.0
25
100
0
98
57
8
18
16
1.63
35793--35915
64
1.9
64
100
0
246
25
17
15
41
1.89
52911--52937
13
2.1
13
100
0
54
29
25
29
14
1.95
58165--58205
21
2.0
21
95
0
73
4
26
12
56
1.56
58232--58381
51
2.9
50
95
2
246
22
22
24
30
1.99
71518--71669
48
3.1
48
86
5
223
23
49
7
20
1.73
71515--71661
51
3.0
48
89
3
222
23
48
6
21
1.72
71615--71738
66
1.9
66
94
0
221
20
52
6
20
1.68
71615--71759
66
2.2
65
89
3
213
19
53
5
22
1.65

Tables:   1

The End!