Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022417.1 Corchorus olitorius cultivar O-4 contig22450, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54833

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6712--6753
22
2.0
21
81
13
50
66
9
14
9
1.44
13450--13512
29
2.1
30
94
2
110
30
20
6
42
1.77
13461--13527
29
2.3
29
87
5
91
29
14
7
47
1.72
15549--15590
21
2.0
22
86
9
61
35
0
11
52
1.38
19490--19535
23
2.0
23
91
0
74
32
4
34
28
1.77
20005--20090
36
2.4
36
98
1
165
51
9
9
30
1.65
25049--25102
3
18.0
3
100
0
108
0
33
0
66
0.92
27161--27185
12
2.1
12
100
0
50
32
8
36
24
1.84
32954--32984
15
2.1
15
100
0
62
41
19
6
32
1.77
33166--33233
32
2.1
32
89
5
102
55
4
8
30
1.50
33523--33558
17
2.1
17
100
0
72
22
16
22
38
1.93
38549--38592
22
2.0
23
82
13
56
31
4
20
43
1.72
40448--40566
39
3.1
39
98
0
229
39
7
32
20
1.80
46150--51137
332
15.1
330
85
3
5874
33
15
17
33
1.91
46182--51133
995
5.0
993
85
4
5881
33
15
16
33
1.91
51362--51423
30
2.1
29
90
3
97
46
19
8
25
1.77

Tables:   1

The End!