Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022418.1 Corchorus olitorius cultivar O-4 contig22451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87206
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:404 original size:17 final size:17
Alignment explanation
Indices: 382--418 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
372 ATAAAACTAT
382 TAACATGCTTATACAAA
1 TAACATGCTTATACAAA
399 TAACATGCTTATACAAA
1 TAACATGCTTATACAAA
416 TAA
1 TAA
419 AATCCAGAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (17 bp):
TAACATGCTTATACAAA
Found at i:1323 original size:2 final size:2
Alignment explanation
Indices: 1312--1418 Score: 58
Period size: 2 Copynumber: 59.0 Consensus size: 2
1302 ATTATTTCTG
* *
1312 AT AT AT -T AT AT AT AT AT AT AT A- ACT A- AT -T AA AA AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * * * *
1350 AT A- AA AT AT AA AT AT AA AT CT AT A- AT AT AT AT AA AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1389 -T AT AT AT A- AT AT -T A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1419 TTCATCGGTT
Statistics
Matches: 81, Mismatches: 11, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
1 12 0.15
2 68 0.84
3 1 0.01
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:2280 original size:332 final size:331
Alignment explanation
Indices: 1601--2502 Score: 1468
Period size: 332 Copynumber: 2.7 Consensus size: 331
1591 AACAGCCCTA
*
1601 GTTTTGGCTAAAAACGCATTCCGGGGCGCCTGCTCAG-TTTGCATGATTTTTTGCGCCGAGACTC
1 GTTTTGGCCAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTC
* *
1665 CGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATATGTTTTTACG
66 TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATTTGTTTTTACG
* * * *
1730 AGCATTTGAATCTTGTTTCGATATTCTTAAAAATTAAATCAGAAAAAAATAAGAGAAACGATATT
131 AGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATC--AAAAAAATAAGAAAAACGACATT
* * *
1795 AGAAGCGTGAAAAGCCCTCCAATC-TTTATAGTGCTCAATTATATATTGTTAACGATTATTTTTG
194 AGAAGCGTGAAAAGCCCTCCAATCGTTT-TAGTGCTGAATTATATATTGTTAACGAGTATCTTTG
* * **
1859 ATAACAAATTAAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCAGAAATCGTGTACTA
258 ATAACAAATTAAGGAAAAAATTTTAGGATCAAAATTTGCAAAATTTTAGCAGAAATCGTGTACTA
1924 ACCATCACG
323 ACCATCACG
*
1933 GTTTTGG-CTAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTC
1 GTTTTGGCCAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTC
*
1997 TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGGATTTGTTTTTACG
66 TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATTTGTTTTTACG
2062 AGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCTAAAAAAATAAGAAAAACGACATTA
131 AGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATC-AAAAAAATAAGAAAAACGACATTA
2127 GAAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAACGAGTATCTTTGAT
195 GAAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAACGAGTATCTTTGAT
* * ** * *
2192 GACAAATTGAGGAAAAAATTTTCTGATCAAAATTTGCAAAATTTTAGCCGAAATTGTGTACTAAC
260 AACAAATTAAGGAAAAAATTTTAGGATCAAAATTTGCAAAATTTTAGCAGAAATCGTGTACTAAC
2257 CATCACG
325 CATCACG
** * * *
2264 GTTTTGGCCAAAAACGCATTATGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTC
1 GTTTTGGCCAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTC
2329 TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATTTGTTTTTACG
66 TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATTTGTTTTTACG
* *
2394 AGCATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAGAAAAAATAAGAAAAACGACATTA
131 AGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCA-AAAAAATAAGAAAAACGACATTA
*
2459 GAAGCGTGAAAAGCCATCCAATCGTTTTAGTGCTGAATTATATA
195 GAAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATA
2503 CTTAGAAAAT
Statistics
Matches: 533, Mismatches: 33, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
331 177 0.33
332 356 0.67
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (331 bp):
GTTTTGGCCAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTTGCGCCGAGACTC
TGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGTATTTGTTTTTACG
AGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCAAAAAAATAAGAAAAACGACATTAG
AAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAACGAGTATCTTTGATA
ACAAATTAAGGAAAAAATTTTAGGATCAAAATTTGCAAAATTTTAGCAGAAATCGTGTACTAACC
ATCACG
Found at i:2908 original size:419 final size:420
Alignment explanation
Indices: 2114--2922 Score: 1158
Period size: 419 Copynumber: 1.9 Consensus size: 420
2104 AAAAAATAAG
* *
2114 AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAAC
1 AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCGTTTTAGCGCTGAACTATATATTGTTAAC
* ** *
2179 GAGTATCTTTGATGACAAATTGAGGAAAAAATTTTCTGATCAAAATTTGCAAAATTTTAGCCGAA
66 GAGTATCTTTGATGAAAAATTGAGGAAAAAATTTTAGGATCAAAATTTACAAAATTTTAGCCGAA
* * * * * *
2244 ATTGTGTACTAACCATCACGGTTTTGGCCAAAAACGCATTATGGGGCGCCGGCTCAGTTTTGCAT
131 ATCGTGTACAAACCATCACGGTTTTGGCCAAAAACGCATTACGAGCCGCCGGCTCAGTTTTGCAA
* * * *
2309 GATTTTTGGCGCCAAGACTCTGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGA
196 GATTTTTGGCGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAGGA
* *
2374 TTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAGAAA
261 TTTAAGTAGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAGAAA
*
2439 AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCGTTTTAGTGCT-GAATTATATA
326 AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCCTTTTAGTGCTGGAATTATATA
2503 CTTAGAAAATTAATTCAGAAAAATTTTTAA
391 CTTAGAAAATTAATTCAGAAAAATTTTTAA
* * * *
2533 AAAAATGATATTAGAAGCTTGAAAAGCCCTCCAATC-TTTTCGGCGCTGAACTATATATTGTTAA
1 AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCGTTTT-AGCGCTGAACTATATATTGTTAA
* * * **
2597 CGAGTATTTTTGAT-AAAAATTTGAGGAAAAACTTTTAGGGTCAATTTTTACAAAATTTTAGCCG
65 CGAGTATCTTTGATGAAAAA-TTGAGGAAAAAATTTTAGGATCAAAATTTACAAAATTTTAGCCG
* * * * * * *
2661 AAATCGTGTACAAACCATCATGGTTTTGGCTAAAAACGCGTTCCGAGCCGCTGGCTTAGTTTTGT
129 AAATCGTGTACAAACCATCACGGTTTTGGCCAAAAACGCATTACGAGCCGCCGGCTCAGTTTTGC
* * *
2726 AAGATTTTTGTCGCCAAGACTCCGTGAAATAACTTTATTCATCTTAACAAATCTCAGCAACATTG
194 AAGATTTTTGGCGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAG
* * * *
2791 GGTTTAAAG-AGTTGTTTTTACGAGAATTTGAATCTTGTTTCGATATTCTTAGAAATTAAATCAG
259 GATTT-AAGTAGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAG
* * *
2855 AAAAAATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCCTTTTAGTGCTGGAATTAT
323 AAAAAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCCTTTTAGTGCTGGAATTAT
2920 ATA
388 ATA
2923 TTGTTAATGA
Statistics
Matches: 341, Mismatches: 45, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
418 8 0.02
419 320 0.94
420 13 0.04
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (420 bp):
AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCGTTTTAGCGCTGAACTATATATTGTTAAC
GAGTATCTTTGATGAAAAATTGAGGAAAAAATTTTAGGATCAAAATTTACAAAATTTTAGCCGAA
ATCGTGTACAAACCATCACGGTTTTGGCCAAAAACGCATTACGAGCCGCCGGCTCAGTTTTGCAA
GATTTTTGGCGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAGGA
TTTAAGTAGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAGAAA
AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCCTTTTAGTGCTGGAATTATATA
CTTAGAAAATTAATTCAGAAAAATTTTTAA
Found at i:3145 original size:332 final size:331
Alignment explanation
Indices: 2498--3395 Score: 1105
Period size: 332 Copynumber: 2.7 Consensus size: 331
2488 GTGCTGAATT
* * * * *
2498 ATATACTTAGAAAATTAATTCAGAAAAATTTTTAAAAAAATGATATTAGAAGCTTGAAAAGCCCT
1 ATATACTTAGAAAATTAAATCAGAAAAA--ATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCT
* * *
2563 CCAAT-CTTTTCGGCGCTGAACTATATATTGTTAACGAGTATTTTTGATAAAAATTTGAGGAAAA
64 CCAATCCTTTT-AGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAA-TTGAGGAAAA
* * * *
2627 ACTTTTAGGGTCAATTTTTACAAAATTTTAGCCGAAATCGTGTACAAACCATCATGGTTTTGGCT
127 ATTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTAC-TACCATCATGGTTTTGGCT
* * * * * * * *
2692 AAAAACGCGTTCCGAGCCGCTGGCTTAGTTTTGTAAGATTTTTGTCGCCAAGACTCCGTGAAATA
191 AAAAACGCGTTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATA
* * * * *
2757 ACTTTATTCATCTTAACAAATCTCAGCAACATTGGGTTTAAAGAGTTGTTTTTACGAGAATTTGA
256 ACTATATTCAGCTTAACAAATCTCAGCAACATTGGATTTAAAGAGTTGTTTTTACGACAATCTGA
*
2822 ATCTTGTTTCG
321 ATCTTCTTTCG
*
2833 ATATTCTTAG-AAATTAAATCAGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCC
1 ATATACTTAGAAAATTAAATCAGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCC
*
2897 AATCCTTTTAGTGCTGGAATTATATATTGTTAATGAGTATTTTTGATAACAAATTGAGGAAAAAT
66 AATCCTTTTAGTGCT-GAATTATATATTGTTAACGAGTATTTTTGATAA-AAATTGAGGAAAAAT
** * * *
2962 TTTTCGGGTCAAAATTTGCAAAATTTTAGCAGAAATCGTGTACTACCATCACGGTTTTGGCCAAA
129 TTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTACCATCATGGTTTTGGCTAAA
** *
3027 AACG-GATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGTTAAGACTCCGTCAAATATC
194 AACGCG-TTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATAAC
* * *
3091 TATATTCAGC-TAACCATATCTCAAG-AACATTGGATTTAAGGA-TTGGTTTTTACGACCATCTG
258 TATATTCAGCTTAA-CAAATCTC-AGCAACATTGGATTTAAAGAGTT-GTTTTTACGACAATCTG
3153 AATCTTCTTTCG
320 AATCTTCTTTCG
* * * * * **
3165 ATATAATTAGAAAATT-AATTAGAAAAAATAAGAAAAACTATATTAGAAGTGTGAAAAGCATTCC
1 ATATACTTAGAAAATTAAATCAGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCC
* * *
3229 AATCTTTTTAGTGCTGAATTATAAATTGTTAACGAGTATTTTTGATAAAAAAATTGAGGGAAAAT
66 AATCCTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGAT--AAAAATTGAGGAAAAAT
* ** * *
3294 TTCTCTAGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCATTGTTTTGGCTAA
129 TTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACT-ACCATCATGGTTTTGGCTAA
*
3359 AAACGCGTTCC-GGGCGCCAGCTCAGTTTT-CAT-ATTTT
193 AAACGCGTTCCGGGGCGCCGGCTCAGTTTTGCATGATTTT
3396 CATCTTTACG
Statistics
Matches: 489, Mismatches: 62, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
330 5 0.01
331 38 0.08
332 297 0.61
333 120 0.25
334 20 0.04
335 9 0.02
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (331 bp):
ATATACTTAGAAAATTAAATCAGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCC
AATCCTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAATTGAGGAAAAATTT
TTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTACTACCATCATGGTTTTGGCTAAAAA
CGCGTTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATAACTAT
ATTCAGCTTAACAAATCTCAGCAACATTGGATTTAAAGAGTTGTTTTTACGACAATCTGAATCTT
CTTTCG
Found at i:3232 original size:751 final size:750
Alignment explanation
Indices: 1789--3251 Score: 2199
Period size: 751 Copynumber: 1.9 Consensus size: 750
1779 TAAGAGAAAC
* * *
1789 GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGATTAT
1 GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAACTATATATTGTTAACGAGTAT
*
1854 TTTTGATAACAAATTAAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCAGAAATCGTG
66 TTTTGATAACAAATTAAGGAAAAACTTTTAGGGTCAATTTTTACAAAATTTTAGCAGAAATCGTG
* * * *
1919 TACTAACCATCACGGTTTTGGCTAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTT
131 TACAAACCATCACGGTTTTGGCTAAAACGCATTCCGAGCCGCCTGCTCAGTTTTGCAAGATTTTT
* * * * * *
1984 TGCGCCGAGACTCTGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGATTTAAGG
196 TGCGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAAG
* *
2049 ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCTAAAAAAATAAG
261 AGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCTAAAAAAATAAG
*
2114 AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAAC
326 AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCCTTTTAGTGCTGAATTATATATTGTTAAC
* * *
2179 GAGTATCTTTGATGACAAATTGAGGAAAAAATTTTCTGATCAAAATTTGCAAAATTTTAGCCGAA
391 GAGTATCTTTGATAACAAATTGAGGAAAAAATTTTCGGATCAAAATTTGCAAAATTTTAGCAGAA
* *
2244 ATTGTGTACTAACCATCACGGTTTTGGCCAAAAACGCATTATGGGGCGCCGGCTCAGTTTTGCAT
456 ATCGTGTACTAACCATCACGGTTTTGGCCAAAAACGCATTACGGGGCGCCGGCTCAGTTTTGCAT
* * **
2309 GATTTTTGGCGCCAAGACTCTGTGAAATATCTATATTCATTTTAACAAATCTCAGTAACATAGGA
521 GATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATGCTAACAAATCTCAGTAACATAGGA
* * * * *
2374 TTTAAGTATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTATTAGAAATAAAATCAGAAA
586 TTTAAGGATTGGTTTTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAATAAAATCAGAAA
2439 AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCGTTTTAGTGCTGAATTATATAC
651 AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCGTTTTAGTGCTGAATTATATAC
2504 TTAGAAAATTAATTCAGAAAAATTTTTAAAAAAAT
716 TTAGAAAATTAATTCAGAAAAATTTTTAAAAAAAT
* * *
2539 GATATTAGAAGCTTGAAAAGCCCTCCAATCTTT-TCGGCGCTGAACTATATATTGTTAACGAGTA
1 GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTAT-AGCGCTCAACTATATATTGTTAACGAGTA
* *
2603 TTTTTGATAA-AAATTTGAGGAAAAACTTTTAGGGTCAATTTTTACAAAATTTTAGCCGAAATCG
65 TTTTTGATAACAAA-TTAAGGAAAAACTTTTAGGGTCAATTTTTACAAAATTTTAGCAGAAATCG
* * * *
2667 TGTACAAACCATCATGGTTTTGGCTAAAAACGCGTTCCGAGCCG-CTGGCTTAGTTTTGTAAGA-
129 TGTACAAACCATCACGGTTTTGGCT-AAAACGCATTCCGAGCCGCCT-GCTCAGTTTTGCAAGAT
* * *
2730 TTTTTGTCGCCAAGACTCCGTGAAATAACTTTATTCATCTTAACAAATCTCAGCAACATTGGGTT
192 TTTTTG-CGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAGGATT
*
2795 TAAAGAGTTGTTTTTACGAGAATTTGAATCTTGTTTCGATATTCTTAGAAATTAAATC-AGAAAA
256 TAAAGAGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCTA-AAAA
* *
2859 AATTAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCCTTTTAGTGCTGGAATTATATAT
320 AATAAGAAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCCTTTTAGTGCT-GAATTATATAT
* * * *
2924 TGTTAATGAGTATTTTTGATAACAAATTGAGGAAAAATTTTTCGGGTCAAAATTTGCAAAATTTT
384 TGTTAACGAGTATCTTTGATAACAAATTGAGGAAAAAATTTTCGGATCAAAATTTGCAAAATTTT
* *
2989 AGCAGAAATCGTGTACT-ACCATCACGGTTTTGGCCAAAAACGGATTCCGGGGCGCCGGCTCAGT
449 AGCAGAAATCGTGTACTAACCATCACGGTTTTGGCCAAAAACGCATTACGGGGCGCCGGCTCAGT
** *
3053 TTTGCATGATTTTTGGCGTTAAGACTCCGTCAAATATCTATATTCA-GCTAACCATATCTCAAG-
514 TTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATGCTAA-CAAATCTC-AGT
*
3116 AACATTGGATTTAAGGATTGGTTTTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAA-AT
577 AACATAGGATTTAAGGATTGGTTTTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAATA-
* * * * * *
3180 TAATTAGAAAAAATAAGAAAAACTATATTAGAAGTGTGAAAAG-CATTCCAATCTTTTTAGTGCT
641 AAATCAGAAAAAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCA-TCCAATCGTTTTAGTGCT
3244 GAATTATA
705 GAATTATA
3252 AATTGTTAAC
Statistics
Matches: 640, Mismatches: 62, Indels: 21
0.89 0.09 0.03
Matches are distributed among these distances:
749 4 0.01
750 151 0.24
751 398 0.62
752 87 0.14
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (750 bp):
GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAACTATATATTGTTAACGAGTAT
TTTTGATAACAAATTAAGGAAAAACTTTTAGGGTCAATTTTTACAAAATTTTAGCAGAAATCGTG
TACAAACCATCACGGTTTTGGCTAAAACGCATTCCGAGCCGCCTGCTCAGTTTTGCAAGATTTTT
TGCGCCAAGACTCCGTGAAATAACTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAAG
AGTTGTTTTTACGAGAATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCTAAAAAAATAAG
AAAAACGACATTAGAAGCGTGAAAAGCCCTCCAATCCTTTTAGTGCTGAATTATATATTGTTAAC
GAGTATCTTTGATAACAAATTGAGGAAAAAATTTTCGGATCAAAATTTGCAAAATTTTAGCAGAA
ATCGTGTACTAACCATCACGGTTTTGGCCAAAAACGCATTACGGGGCGCCGGCTCAGTTTTGCAT
GATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATGCTAACAAATCTCAGTAACATAGGA
TTTAAGGATTGGTTTTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAATAAAATCAGAAA
AAATAAGAAAAACGACATTAGAAGCGTGAAAAGCCATCCAATCGTTTTAGTGCTGAATTATATAC
TTAGAAAATTAATTCAGAAAAATTTTTAAAAAAAT
Found at i:3637 original size:261 final size:261
Alignment explanation
Indices: 3139--3637 Score: 754
Period size: 261 Copynumber: 1.9 Consensus size: 261
3129 AGGATTGGTT
*
3139 TTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAAATTAATTAGAAAAAATAAGAAAAACT
1 TTTACGACCATCTGAATCTTCTTTCCATATAATTAGAAAATTAATTAGAAAAAATAAGAAAAACT
* * * *
3204 ATATTAGAAGTGTGAAAAGCATTCCAATCTTTTTAGTGCTGAATTATAAATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCACTCCAATCTTTATAGTGCTCAATTATAAATTGTTAACGAGTATT
* * * *
3269 TTTGATAAAAAAATTGAGGGAAAATTTCTCTAGTCAATTTTTGTAAAATTTTAGCCGAAATCGTG
131 TTTGATAAAAAAATTGAGGAAAAACTTCTCTAGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
* *
3334 TACTAACCATCATTGTTTTGGCTAAAAACGCGTTCCGGGCGCCAGCTCAGTTTTCATATTTTCAT
196 TACTAACCATCACTGTTTTGGCTAAAAACGCATTCCGGGCGCCAGCTCAGTTTTCATATTTTCAT
3399 C
261 C
* * * *
3400 TTTACGAGCATTTGAATCTTGTTTCCATATACTTAG-AAATTAATTTAGAAAAAATAAGAAAAAC
1 TTTACGACCATCTGAATCTTCTTTCCATATAATTAGAAAATTAA-TTAGAAAAAATAAGAAAAAC
* *
3464 TATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGAGTAT
65 TATATTAGAAGCGTGAAAAGCACTCCAATCTTTATAGTGCTCAATTATAAATTGTTAACGAGTAT
*
3529 TTTTGAT-AACAAATTGAGGAAAAACTT-T-TAGGGTCAATTTTTGCAAAATTTTAGCCGAAATC
130 TTTTGATAAAAAAATTGAGGAAAAACTTCTCTA--GTCAATTTTTGCAAAATTTTAGCCGAAATC
* *
3591 ATGTACTAATCATCACTGTTTTGGCTAAAAACGCATTACGGGGCGCC
193 ATGTACTAACCATCACTGTTTTGGCTAAAAACGCATT-CCGGGCGCC
3638 TCGTTAGTTT
Statistics
Matches: 214, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
258 2 0.01
259 1 0.00
260 86 0.40
261 125 0.58
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (261 bp):
TTTACGACCATCTGAATCTTCTTTCCATATAATTAGAAAATTAATTAGAAAAAATAAGAAAAACT
ATATTAGAAGCGTGAAAAGCACTCCAATCTTTATAGTGCTCAATTATAAATTGTTAACGAGTATT
TTTGATAAAAAAATTGAGGAAAAACTTCTCTAGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
TACTAACCATCACTGTTTTGGCTAAAAACGCATTCCGGGCGCCAGCTCAGTTTTCATATTTTCAT
C
Found at i:5515 original size:980 final size:981
Alignment explanation
Indices: 3400--7228 Score: 4744
Period size: 980 Copynumber: 3.9 Consensus size: 981
3390 TATTTTCATC
* * * *
3400 TTTACGAGCATTTGAATCTTGTTTCCATATACTTAGAAATTAATTTAGAAAAAATAAGAAAAACT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACT
* *
3465 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAATTATATATTGTTAACAAGTATT
* *
3530 TTTGATAACAAATTGAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGT
131 TTTGATAAAAAATTGAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
* * * *
3595 ACTAATCATCACTGTTTTGGCTAAAAACGCATTACGGGGCGCCT-CGTTAGTTTTGCATGATTTT
196 ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCTGC-TCAGTTTTGCATGATTTT
* *
3659 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTTAGCAACATAGGATTCAAG
260 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAG
* * * *
3724 GATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATGAGAAAAAATAA
325 GAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAATAA
*
3789 GAAAAACGATATTAGAAGCGTGAAAAACCCTCCAATCTTTTAGTGCTGAATTATATATTGTTAAC
390 GAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTAGTGCTGAATTATATATTGTTAAC
*
3854 GAGTATTTTTGATAACAAATTGAGGGAAAAAAATTTGGGTCAAAATTTGCAAAATTTTAGCCGAA
455 GAGTATTTTTGATAACAAATTGA-GG-AAAAAATTT--GTC---ATGTGCAAAATTTTAGCCGAA
* *
3919 ATCATGTACTAA-CTATCACGGTTTTGGCCAAAAACGCATTCCTGGGCGCCGGCTCAGTTTTGTA
513 ATCGTGTACTAATC-ATCACGGTTTTGGCCAAAAACGCATTCC-GGG-GCCGGCTCAGTTTTGCA
* * *
3983 TGA-TTTTGGCGTCAAGACTCCGTCGAATATCTATATTCATCTAACCATATCTCAGCAACATTGG
575 TGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGG
* * * *
4047 ATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATAATTAGAAATTAATAAAAAA
640 ATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATATAATTAGAAATTAAT-CAGAA
* * * *
4112 AATAAGAAAAATGATATTAGAAGCATGAAAAGCCCTCCAATATTTTTAGTGCTAAATTATATATT
704 AATAAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAAT-CTTTTAGTGCTGAATTATATATT
4177 GTTAACGAGTATTTTTGATGAA-AAATTGAGGAAAAATTTTCGGG--------T---AAATTTTA
768 GTTAACGAGTATTTTTGAT-AACAAATTGAGGAAAAATTTTCGGGTCAATTTTTGCAAAATTTTA
* * * * *
4230 GCTGAAATCGTGTTCTAACCATCACGATTTTGGCTAAAAACGCATTCAGGGACGCCAGCTCAGTT
832 GCCGAAATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCATTCTGGGGCGCCAGCTCAGTT
* * * * * *
4295 TTCCATGATTTTTGACGCCAAGATTCCGTGAAATATCTATATTCAACTTAACAAATCACTGCATC
897 TTGCATGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTTAACAAATCTCTGCATC
4360 ATAGGATTTAAGGT-GTTGTT
962 ATAGGATTTAA-GTAGTTGTT
* * * * * *
4380 TTTACGAGTATCTTAATCGTGTTTCGATATACTTAGAAATTAATTTAGAAAAAATAAGAAAAATT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACT
* * * *
4445 ATATTAGAAGCGTGAAAAACCCTCCAATCATTATAGTGCTCAATTATATTTTGTTAACGAA-TAT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAATTATATATTGTTAAC-AAGTAT
* ** * *
4509 TTTTTATACCAAATT-ATGGGAAAACTTTTAGGGTGAATTTTTGCAAAATTTTAGCCGAAATCGT
130 TTTTGATAAAAAATTGA-GGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
*
4573 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTTCGGGGCGCCTGCTCAGTTTTGCATGATTT
194 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTT
* * * *
4638 TTGGCGCCAAAACTCCGTGAAATATCTATATTCATTTTAACAAATCTCAACATCATAGGATTTAA
259 TTGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAA
* *
4703 GGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATT-AGAAAAAAT
324 GGAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATT-AATTCAGAAAAAAT
* *
4767 AAGAAAAACGACATTAGAAGCTTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTT
388 AAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATC-TTTTAGTGCTGAATTATATATTGTT
* * *
4832 AACGAGCATTTTTGATAACAGATTGAGGAAAAAATTT-TC-TGGGCAAAATTTTAGCCGAAATCG
452 AACGAGTATTTTTGATAACAAATTGAGGAAAAAATTTGTCATGTGCAAAATTTTAGCCGAAATCG
*
4895 TGTAC-AATCATCACGGTTTTGGCCAAAAACGCATTCTGGGGCATCGGCTCAGTTTTGCATGATT
517 TGTACTAATCATCACGGTTTTGGCCAAAAACGCATTCCGGGGC--CGGCTCAGTTTTGCATGATT
** * *
4959 TTTGGCGTAAAGACTCCGTCAAATATCTATATTCATCTAACCATATCTCAACAACATTGGATTTA
580 TTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTA
* * *
5024 AGGATTTGTTTTTACGACCATCTAAATCTTCTTTCGATATAATTAGAAAATTAATCAG-GAA-AA
645 AGGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATATAATTAG-AAATTAATCAGAAAATAA
* * * ** * * *
5087 -AAAAACTATATTAGAAGTGTGAGAAGCATTCTAATCTTGTTCGTGCTGAATTATAAATTGTTAA
709 GAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTT-TTAGTGCTGAATTATATATTGTTAA
* * * * *
5151 CGAGTATTTTTCATGATAATTTGAGGAAAAATTTCTCGGGTCAATTTTTGTAAAATTTTAGCCGA
773 CGAGTATTTTTGATAACAAATTGAGGAAAAATTT-TCGGGTCAATTTTTGCAAAATTTTAGCCGA
* * *
5216 AATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCGTTCTGGGGCGCCGGTTCAGTTTTGCA
837 AATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCATTCTGGGGCGCCAGCTCAGTTTTGCA
* * *
5281 TGATTTTTGGCGCCAAGACTCTGTCAAATATCAATATTCATCTTAAAAAATCTCTGCATCATAGG
902 TGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTTAACAAATCTCTGCATCATAGG
5346 ATTTAAGTAGTTGTT
967 ATTTAAGTAGTTGTT
* * * *
5361 TTTACGAGCATCTGAATCTTGTTTTGATATACTTAGAAATTAAATCAGGAAAAA-AA-AAAACCG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACT
* * * *
5424 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTT-TTGACGCTGAACTATATATTGTTAACAAGTAA
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAG-CGCTCAATTATATATTGTTAACAAGTAT
* * **
5488 TTTTGATAAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGTAAAACGTTAGCCGAAATCGT
130 TTTTGAT-AAAAAATTGAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * * * * *
5553 GTACTAACTATCATGGTTTTGGCTAAAAACGCGTTCCGAGCCGCCGGCTTAGTTTTGCATGATTT
194 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTT
* * * *
5618 TTGGCGCCAAGAGTCCATGAAATA-ATATTATTCATCTTAACAAATCTCAGCAACATTGTG-TTT
259 TTGGCGCCAAGACTCCGTGAAATATCTA-TATTCATCTTAACAAATCTCAGCAACATAG-GATTT
*
5681 AAGGAGTTGTTTTTACGAGCATTTGAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAA
322 AAGGAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAA
*
5746 TAAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGT
387 TAAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTT-TAGTGCTGAATTATATATTGT
* * *
5811 TAACGAGTACTTTTT-ATAAAAAATTGAGGAAAAACTTTTAGTGTCAATTTTTGCAAAATTTTAG
451 TAACGAGTA-TTTTTGATAACAAATTGAGGAAAAA--ATT--TGTC-A--TGTGCAAAATTTTAG
* * *
5875 CCGAAATCGTGTACTAAT-A--ACGGTTTTGGCTAAAAACGCATTCCGGACGCCTGCTCAGTTTT
508 CCGAAATCGTGTACTAATCATCACGGTTTTGGCCAAAAACGCATTCCGG-GGCCGGCTCAGTTTT
* * * * *
5937 GCATGATTTTTGGTGCCAAGACTCCATGAAATATCTATATTCATTTTAA-CAAATCTCAGCAATA
572 GCATGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCA-TCTAACCAAATCTCAGCAACA
* * **
6001 TAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATC
636 TTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATATAATTAGAAATT-AATC
* *
6066 AGAAAAAATAAGAAAAACGACATTAGAATCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTA
700 AG--AAAATAAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATC-TTTTAGTGCTGAATTA
* * **
6131 TATATTGTTAACGAGTATTTTTGATAACAAATTGAGAAAAAAATTTCGGGTCAAAATTTGCAAAA
762 TATATTGTTAACGAGTATTTTTGATAACAAATTGAGGAAAAATTTTCGGGTCAATTTTTGCAAAA
* * *
6196 TTTTAGCCGAAATCGTG---TAACCATCACGGTTTTGGCCAAAAACGCATTTCT-AGGCGCCAAC
827 TTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCA-TTCTGGGGCGCCAGC
* * * *
6257 TCAGTTTTGCATGATTTTTGGCGTCAAGACTCCATCAAAAATCTATATTCATC-TAACCATATCT
891 TCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTTAA-CAAATCT
** * * *
6321 CAACAACATTA-GATTTAAGGATTTGTT
955 CTGCATCA-TAGGATTTAAGTAGTTGTT
* * * * *
6348 TTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAAATCAATCAGAAAAAATAAGAAAAACT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACT
* * *** * * * * *
6413 ATATTAGAAGTGTG-ACAGTATTCCAATATTTCTAGCGTTGAATTATATATTATTAA-ACAGTAT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAATTATATATTGTTAACA-AGTAT
* * *
6476 TTTTGATGAAAAATTGAGGAAAAA-TTTCTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCGT
130 TTTTGATAAAAAATTGAGGAAAAACTTT-TAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
** * * * *
6540 GTACTAACCATCACACTTTTGGCTAAAAACGCGTTCCGGGGCGCCAGCTCTGTTTTGTATGATTT
194 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTT
* * * *
6605 TTGGCGCCAAGACTCCGTGAAATATCAATATTCATCTTAACAAATCTCTGGATCATAGGATTTAA
259 TTGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAA
*
6670 GGAGTTGTTTTTACGAGTATCTGAATCTTGTTTCGATATACTTAGAAAATTAATTCAGAAAAAAA
324 GGAGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATACTTAG-AAATTAATTCAG--AAAAA
* * * * * * *
6735 ATTAAAAAAAAATGAGATTAGAAGCGTGAAAAGCCCAT-TAATCTTTTTGGCGCTGAACTATATA
386 A-T-AAGAAAAACGATATTAGAAGCGTGAAAAGCCC-TCCAATC-TTTTAGTGCTGAATTATATA
*** *
6799 TTGTTAACGAGTATTTTTGATAA-ACAATTGAGGAAACCTTTTCGGGTCAGTTTTTGCAAAATTT
447 TTGTTAACGAGTATTTTTGATAACA-AATTGAGGAAAAAATTT---GTCA---TGTGCAAAATTT
* * * * *
6863 TAGCCGAAATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCGTTCCGAGCCGCCGGCTTAG
505 TAGCCGAAATCGTGTACTAATCATCACGGTTTTGGCCAAAAACGCATTCCG-G-GGCCGGCTCAG
* * * * * **
6928 TTTTGCATTATTTTTGGCGCCAAGACTTCGTGAAATAACTTTATTCATCTTCCCAAATCTCAGCA
568 TTTTGCATGATTTTTGGCGCCAAGACTCCGTCAAATATCTATATTCATCTAACCAAATCTCAGCA
* * * *
6993 ACATTGGGTTTAAGGAGTTGTTTTTACGAGCATTTAAATCTTGTTTCGATATACTTAGAAATTAA
633 ACATTGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATATAATTAGAAATTAA
* * *
7058 TTCAGAAAAAATAAGAAAAACGATATTAGATGCGTGAAAAGCCCTCCAGTCTTTATAGTGCTCAA
698 -TCAG--AAAATAAGAAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTT-TAGTGCTGAA
** *
7123 TTATATATTGTTAACGAGTATTTTTGATAACAAATTGAGGAAAAACTTTTATGGTCAGTTTTTGC
759 TTATATATTGTTAACGAGTATTTTTGATAACAAATTGAGGAAAAA-TTTTCGGGTCAATTTTTGC
*
7188 AAAATTTTAGCCGAATTCGTGTACTAACCATCACGGTTTTG
823 AAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTG
7229 AAGTTTAAGA
Statistics
Matches: 2483, Mismatches: 279, Indels: 155
0.85 0.10 0.05
Matches are distributed among these distances:
968 3 0.00
969 80 0.03
970 10 0.00
971 48 0.02
972 133 0.05
973 8 0.00
976 2 0.00
978 5 0.00
979 79 0.03
980 687 0.28
981 246 0.10
982 2 0.00
984 1 0.00
985 7 0.00
986 123 0.05
987 381 0.15
988 65 0.03
989 50 0.02
990 49 0.02
991 123 0.05
992 77 0.03
993 4 0.00
994 32 0.01
995 218 0.09
996 33 0.01
999 17 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (981 bp):
TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACT
ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGCGCTCAATTATATATTGTTAACAAGTATT
TTTGATAAAAAATTGAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCTGCTCAGTTTTGCATGATTTTT
GGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAGG
AGTTGTTTTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAATAAG
AAAAACGATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTAGTGCTGAATTATATATTGTTAACG
AGTATTTTTGATAACAAATTGAGGAAAAAATTTGTCATGTGCAAAATTTTAGCCGAAATCGTGTA
CTAATCATCACGGTTTTGGCCAAAAACGCATTCCGGGGCCGGCTCAGTTTTGCATGATTTTTGGC
GCCAAGACTCCGTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGGATT
TGTTTTTACGAGCATCTAAATCTTGTTTCGATATAATTAGAAATTAATCAGAAAATAAGAAAAAC
GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
TTTGATAACAAATTGAGGAAAAATTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTA
CTAACCATCACGGTTTTGGCTAAAAACGCATTCTGGGGCGCCAGCTCAGTTTTGCATGATTTTTG
GCGCCAAGACTCCGTCAAATATCTATATTCATCTTAACAAATCTCTGCATCATAGGATTTAAGTA
GTTGTT
Found at i:5614 original size:331 final size:332
Alignment explanation
Indices: 3400--7228 Score: 4771
Period size: 331 Copynumber: 11.6 Consensus size: 332
3390 TATTTTCATC
* * * * *
3400 TTTACGAGCATTTGAATCTTGTTTCCATATACTTAGAAATTAATTTAGAAAAAATAAGAAAAACT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* *
3465 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
* *
3530 TTTGATAACAAATTGAGGAAAAACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGT
131 TTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
* * * * *
3595 ACTAATCATCACTGTTTTGGCTAAAAACGCATTACGGGGCGCC-TCGTTAGTTTTGCATGATTTT
196 ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGC-TCAGTTTTGCATGATTTT
* *
3659 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTTAGCAACATAGGATTCAAG
260 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAG
3724 GATTTGTT
325 GATTTGTT
* *
3732 TTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATGAGAAAAAATAAGAAAAACG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
*
3797 ATATTAGAAGCGTGAAAAACCCTCCAATC-TTTTAGTGCTGAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
** ** *
3861 TTTGATAACAAATTGAGGGAAAAAAATTT-GGGTCAAAATTTGCAAAATTTTAGCCGAAATCATG
131 TTTGATAACAAATTGA-GGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* * * *
3925 TACTAACTATCACGGTTTTGGCCAAAAACGCATTCCTGGGCGCCGGCTCAGTTTTGTATGA-TTT
195 TACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTT
* * *
3989 TGGCGTCAAGACTCCGTCG-AATATCTATATTCATC-TAACCATATCTCAGCAACATTGGATTTA
260 TGGCGCCAAGACTCCGT-GAAATATCTATATTCATCTTAA-CAAATCTCAGCAACATAGGATTTA
*
4052 AGAATTTGTT
323 AGGATTTGTT
* * *
4062 TTTACGAGCATCTGAATCTTGTTTCGATATAATTAGAAATT-AAT-AAAAAAAATAAGAAAAATG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * *
4125 ATATTAGAAGCATGAAAAGCCCTCCAATATTTTTAGTGCTAAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
*
4190 TTTGATGAA-AAATTGAGGAAAAA-TTTTCGGG--------T---AAATTTTAGCTGAAATCGTG
131 TTTGAT-AACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* * * * * *
4242 TTCTAACCATCACGATTTTGGCTAAAAACGCATTCAGGGACGCCAGCTCAGTTTTCCATGATTTT
195 TACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTT
* * * * * *
4307 TGACGCCAAGATTCCGTGAAATATCTATATTCAACTTAACAAATCACTGCATCATAGGATTTAAG
260 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAG
4372 G-TGTTGTT
325 GAT-TTGTT
* * * * * **
4380 TTTACGAGTATCTTAATCGTGTTTCGATATACTTAGAAATTAATTTAGAAAAAATAAGAAAAATT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * * * * *
4445 ATATTAGAAGCGTGAAAAACCCTCCAATCATTATAGTGCTCAATTATATTTTGTTAACGAATATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
* * * * *
4510 TTTTATACCAAATT-ATGGGAAAACTTTTAGGGTGAATTTTTGCAAAATTTTAGCCGAAATCGTG
131 TTTGATAACAAATTGA-GGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* *
4574 TACTAACCATCACGGTTTTGGCTAAAAACGCATTTCGGGGCGCCTGCTCAGTTTTGCATGATTTT
195 TACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTT
* * * *
4639 TGGCGCCAAAACTCCGTGAAATATCTATATTCATTTTAACAAATCTCAACATCATAGGATTTAAG
260 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAG
4704 GATTTGTT
325 GATTTGTT
* *
4712 TTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATTAGAAAAAATAAGAAAAACG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * * *
4777 ACATTAGAAGCTTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAACGAGCATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
* * *
4842 TTTGATAACAGATTGAGGAAAAAATTTTCTGG---------GCAAAATTTTAGCCGAAATCGTGT
131 TTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
* * * **
4898 AC-AATCATCACGGTTTTGGCCAAAAACGCATTCTGGGGCATCGGCTCAGTTTTGCATGATTTTT
196 ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTT
** * * * *
4962 GGCGTAAAGACTCCGTCAAATATCTATATTCATC-TAACCATATCTCAACAACATTGGATTTAAG
261 GGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAA-CAAATCTCAGCAACATAGGATTTAAG
5026 GATTTGTT
325 GATTTGTT
* * * * *
5034 TTTACGACCATCTAAATCTTCTTTCGATATAATTAGAAAATT-AATCAG---GAA-AA-AAAAAC
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAG-AAATTAAATCAGAAAAAATAAGAAAAAC
* * * ** * * * *
5093 TATATTAGAAGTGTGAGAAGCATTCTAATCTTGTTCGTGCTGAATTATAAATTGTTAACGAGTAT
65 GATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTAT
* * * * *
5158 TTTTCATGATAATTTGAGGAAAAA-TTTCTCGGGTCAATTTTTGTAAAATTTTAGCCGAAATCGT
130 TTTTGATAACAAATTGAGGAAAAACTTT-TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * *
5222 GTACTAACCATCACGGTTTTGGCTAAAAACGCGTTCTGGGGCGCCGGTTCAGTTTTGCATGATTT
194 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTT
* * * * * *
5287 TTGGCGCCAAGACTCTGTCAAATATCAATATTCATCTTAAAAAATCTCTGCATCATAGGATTTAA
259 TTGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAA
* *
5352 GTAGTTGTT
324 GGATTTGTT
* * *
5361 TTTACGAGCATCTGAATCTTGTTTTGATATACTTAGAAATTAAATCAGGAAAAA-AA-AAAACCG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * * *
5424 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTT-GACGCTGAACTATATATTGTTAACAAGTAA
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAG-TGCTGAATTATATATTGTTAACGAGTAT
* * **
5488 TTTTGATAAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGTAAAACGTTAGCCGAAATCGT
130 TTTTGAT-AACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGT
* * * * * *
5553 GTACTAACTATCATGGTTTTGGCTAAAAACGCGTTCCGAGCCGCCGGCTTAGTTTTGCATGATTT
194 GTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTT
* * * *
5618 TTGGCGCCAAGAGTCCATGAAATA-ATATTATTCATCTTAACAAATCTCAGCAACATTGTG-TTT
259 TTGGCGCCAAGACTCCGTGAAATATCTA-TATTCATCTTAACAAATCTCAGCAACATAG-GATTT
*
5681 AAGGAGTTGTT
322 AAGGATTTGTT
* *
5692 TTTACGAGCATTTGAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAATAAGAAAAACG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* *
5757 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGAGTACT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTA-T
* * *
5822 TTTT-ATAAAAAATTGAGGAAAAACTTTTAGTGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
130 TTTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
* * *
5886 TACT-A--ATAACGGTTTTGGCTAAAAACGCATTCC-GGACGCCTGCTCAGTTTTGCATGATTTT
195 TACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTT
* * * *
5947 TGGTGCCAAGACTCCATGAAATATCTATATTCATTTTAACAAATCTCAGCAATATAGGATTTAAG
260 TGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAG
6012 GATTTGTT
325 GATTTGTT
*
6020 TTTACGAGCATCTGAATCTTGTTTCGATATTCTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * *
6085 ACATTAGAATCGTGAAAAGCCCTCCAATCGTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
** **
6150 TTTGATAACAAATTGA-GAAAAAAATTTCGGGTCAAAATTTGCAAAATTTTAGCCGAAATCGTG-
131 TTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
* * ** **
6213 --TAACCATCACGGTTTTGGCCAAAAACGCATTTCTAGGCGCCAACTCAGTTTTGCATGATTTTT
196 ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTT
* * * * * *
6276 GGCGTCAAGACTCCATCAAAAATCTATATTCATC-TAACCATATCTCAACAACATTA-GATTTAA
261 GGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAA-CAAATCTCAGCAACA-TAGGATTTAA
6339 GGATTTGTT
324 GGATTTGTT
* * * * * *
6348 TTTACGACCATCTGAATCTTCTTTCGATATAATTAGAAAATCAATCAGAAAAAATAAGAAAAACT
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * *** * * * * *
6413 ATATTAGAAGTGTG-ACAGTATTCCAATATTTCTAGCGTTGAATTATATATTATTAAAC-AGTAT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTT-AACGAGTAT
*
6476 TTTTGATGAA-AAATTGAGGAAAAA-TTTCTCGGATCAATTTTTGCAAAATTTTAGCCGAAATCG
130 TTTTGAT-AACAAATTGAGGAAAAACTTT-TCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCG
** * * * *
6539 TGTACTAACCATCACACTTTTGGCTAAAAACGCGTTCCGGGGCGCCAGCTCTGTTTTGTATGATT
193 TGTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATT
* * * *
6604 TTTGGCGCCAAGACTCCGTGAAATATCAATATTCATCTTAACAAATCTCTGGATCATAGGATTTA
258 TTTGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTA
*
6669 AGGAGTTGTT
323 AGGATTTGTT
* * *
6679 TTTACGAGTATCTGAATCTTGTTTCGATATACTTAGAAAATTAATTCAGAAAAAAAATTAAAAAA
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAG-AAATTAAATCAG--AAAAAA-T-AAGAA
* * * * * *
6744 AAATGAGATTAGAAGCGTGAAAAGCCCAT-TAATCTTTTTGGCGCTGAACTATATATTGTTAACG
61 AAACGATATTAGAAGCGTGAAAAGCCC-TCCAATCTTTTTAGTGCTGAATTATATATTGTTAACG
* *
6808 AGTATTTTTGATAA-ACAATTGAGG-AAACCTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAA
125 AGTATTTTTGATAACA-AATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAA
* * * *
6871 ATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCGTTCCGAGCCGCCGGCTTAGTTTTGCAT
189 ATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCAT
* * * * ** * *
6936 TATTTTTGGCGCCAAGACTTCGTGAAATAACTTTATTCATCTTCCCAAATCTCAGCAACATTGGG
254 GATTTTTGGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGA
*
7001 TTTAAGGAGTTGTT
319 TTTAAGGATTTGTT
* * *
7015 TTTACGAGCATTTAAATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAATAAGAAAAACG
1 TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
* * * *
7080 ATATTAGATGCGTGAAAAGCCCTCCAGTCTTTATAGTGCTCAATTATATATTGTTAACGAGTATT
66 ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
** * *
7145 TTTGATAACAAATTGAGGAAAAACTTTTATGGTCAGTTTTTGCAAAATTTTAGCCGAATTCGTGT
131 TTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
7210 ACTAACCATCACGGTTTTG
196 ACTAACCATCACGGTTTTG
7229 AAGTTTAAGA
Statistics
Matches: 3021, Mismatches: 389, Indels: 174
0.84 0.11 0.05
Matches are distributed among these distances:
316 3 0.00
317 152 0.05
318 97 0.03
319 9 0.00
320 91 0.03
321 10 0.00
322 151 0.05
323 31 0.01
324 1 0.00
325 1 0.00
326 30 0.01
327 278 0.09
328 468 0.15
329 84 0.03
330 175 0.06
331 566 0.19
332 513 0.17
333 72 0.02
334 11 0.00
335 13 0.00
336 214 0.07
337 50 0.02
338 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (332 bp):
TTTACGAGCATCTGAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACG
ATATTAGAAGCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATT
TTTGATAACAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGT
ACTAACCATCACGGTTTTGGCTAAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTT
GGCGCCAAGACTCCGTGAAATATCTATATTCATCTTAACAAATCTCAGCAACATAGGATTTAAGG
ATTTGTT
Found at i:8195 original size:333 final size:334
Alignment explanation
Indices: 7754--10126 Score: 2587
Period size: 333 Copynumber: 7.2 Consensus size: 334
7744 AAAAACCATG
* *
7754 AAAAACGCA-TCCGGGGCGCCTGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCATGAAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
* * * * *
7818 TCTATATTTATTTTAA-CAAATTTCAGCAACA-TAGGATTTAAGGATTTATTTTTACAAGCATCT
66 TCTATATTCA-TCTAACCAAATCTCAGCAACATTA-GATTTAAGGATTTGTTTTTACGAGCATCT
* *
7881 GAATCTTGTTTCGATATTCTTAGAAATTAAATCAGAAAAAATAAGAAAAATGATATTAGAAGCGT
129 GAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGT
* * *
7946 GAAAAGCCCTCCAATCTTTTTAGTGTTGAATTCTATATTGTTAACGAGCATTTTTGATAAAAAAA
194 GAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAAAA
* * * *
8011 ATTGAGGAAAATTTTTTCGGGTCAAAATTTACAAAA-TTTAGCCAAAATCATGTACTAACCATCA
259 ATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCA
*
8075 CGGTTTTGGCC
324 CGGTTTTGGCT
** *
8086 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGTTAAGACTCCGTCAAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
* * *
8151 TCTATATTCATCTAACCATATCTCAGCAACATTAGATTTAAGGATTTGTTTTTATGACCATCTGA
66 TCTATATTCATCTAACCAAATCTCAGCAACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * * * *
8216 ATCTTCTTTCGAAATAATTAGAAAATT-AATCAGAAAAAATAAGAAAAACTATATTAGAAGTGTG
131 ATCTTGTTTCGATATACTTAG-AAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGTG
* ** * * * * *
8280 GAAAGCATTCTAATCTTTTTTGCGTTGAATTATATATTGCTAAAC-AGTATTTTTGATAAAAAAA
195 AAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTG-TTAACGAGTATTTTTGAT-AAAAAA
* *
8344 AATTGAGGAAAAATTTCTCGGGTC-------A-AAAATTTTAGCCGAAATCGTGTACTAACCATT
258 AATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATC
**
8401 ACAATTTTGGCT
323 ACGGTTTTGGCT
* * ** * *
8413 AAAAACGCGTTCTGGGGCGCCGATTCAGTTTTGCATGATTTTTGGCACCAATACTCCGTGAAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
** * * * * *
8478 TAAATATTCATCTTAA-CAAATCTCTGTATCA-TAGGATTTAAGGAGTTGTTTTTACAAGCATCT
66 TCTATATTCATC-TAACCAAATCTCAGCAACATTA-GATTTAAGGATTTGTTTTTACGAGCATCT
* * * * *
8541 GAATCTTGTTTCTATATACTTAGAAATTCATTCAGAAAAAATTTTAAAAAAAAACGTTATTAGAA
129 GAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAA---T-AAGAAAAACGATATTAGAA
* * * * * *
8606 GCGTGAAAAGCCCTCCAATCTTTTTGGCGCTGAACTATATATTGTTAACAAGTAGTTTTG-T-TA
190 GCGTGAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAA
* * * *
8669 AACAATTGAGGAAAAACTTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAATTGTGTACTAACC
255 AAAAATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACC
8734 ATCACGGTTTTGGCT
320 ATCACGGTTTTGGCT
* * * * * *
8749 AAAAACGCGTTCTGAGCCACCGGCTTAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
* * ** * * * *
8814 ACTTTATTCATCTTGCCAAATCTCAGCAACATTGGGTTTAAGGAGTTGTTTTTACGAGCATTTGA
66 TCTATATTCATCTAACCAAATCTCAGCAACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * *
8879 ATCTTGTTTCGATATACTTAGAAATTAATTCAGAAAAAATTATAAAAACGATATTAGAAGCGTGA
131 ATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGTGA
* * *
8944 AAAGCCCTCCAATCTTTATAGTGCTCAATTATATATTGTTAACGAGTATTTTTTATAAAAAAAA-
196 AAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAAAAAT
* * * * * *
9008 TGAGGAAATACTTTTAGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACG
261 TGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
9073 GTTTTGGCT
326 GTTTTGGCT
* * * *
9082 AAAAACGCATTCCAGGGCCCCTGCTCAATTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
*
9147 TCTATATTCATCTTAA-CAAATCTTAGCAACA-TAGGATTTAAGGATTTGTTTTTACGAGCATCT
66 TCTATATTCATC-TAACCAAATCTCAGCAACATTA-GATTTAAGGATTTGTTTTTACGAGCATCT
* * *
9210 GAATCTTGTTTCGATATTCTTAGAAATTAAATCAGAAAAAATAAGAAAGACGATATTAGAAGCAT
129 GAATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGT
* * * *
9275 GAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGATAACGATTATTTTT--TATAACAA
194 GAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAAAA
* * * *
9338 ATTGAGGAAAAAATTTCCGTGTCAAAATTTACAAAATTTTAGCCGAAATC--G------------
259 ATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCA
*
9389 CGGTTTTGGCA
324 CGGTTTTGGCT
* * **
9400 AAAAATGCATTCCGGGGCGCCGGCTCAGTTTTGAATGATTTTTGGCGTTAAGACTCC--G-AATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
* * * *
9462 TTTATATTCATCTAACCATATCTCAGCAACATTGGATTTAAGGATTTGTTTTTACGACCATCTGA
66 TCTATATTCATCTAACCAAATCTCAGCAACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * *
9527 ATCTTCTTTCGATATAAC-TAGAAAATT-AATCAGAAAAAATAAGAAAAACTATATTAGAAGTGT
131 ATCTTGTTTCGATAT-ACTTAG-AAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGT
** * * *
9590 GAAAAGCATTCCAATCTTTTTATTGATGAATTATAAATTGTTAACGAGTATTTTTGATTAAAAAA
194 GAAAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGA-TAAAAAA
* ** * **
9655 AATTGAGGAAAAATTTCTCTAGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATC
258 AATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATC
*
9720 ATGGTTTTGGCT
323 ACGGTTTTGGCT
* * * * * ** *
9732 AAAAACGCGTTTCGGGGTGCCGGGTCAGTTTTGCATTATTTTTTACGCCAAGACTCCGTGGAATA
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
* * * * *
9797 TCTATATTTATCTAACCAAATCTCATCAACATTGGATTTAAGAATTTGTTTTTACGAGCATTTGA
66 TCTATATTCATCTAACCAAATCTCAGCAACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * * * * * * * * * *
9862 ATCTTATTTCGATTTAATAAAAAACTAATTCAGGAAAAGTAAGAAACACGATGTTAGAAGCGTGA
131 ATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGTGA
*
9927 AAAGCCCTCCAATCTTTTT-G-GCATTGAATTATATATTGTTTACGAGTATTTTTGATATAAAAG
196 AAAGCCCTCCAATCTTTTTAGTGC--TGAATTATATATTGTTAACGAGTATTTTTG-------A-
* * * **
9990 GGTAAAAAAAAATGCGG-AAAATTTTTCGGGTCAATTTTTGTAAAATTTTAGCCGAAATC--GTA
251 --TAAAAAAAATTGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTA
**
10052 -T-A-GGTCACGGTTTTGGCT
314 CTAACCATCACGGTTTTGGCT
* * * * * * *
10070 AAAAACGCGTTCCGCGGCGCCGGGTCAATTTTGCATTAATTTTGGCGCCAACACTCC
1 AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCC
10127 CGAGTCTAGA
Statistics
Matches: 1719, Mismatches: 255, Indels: 128
0.82 0.12 0.06
Matches are distributed among these distances:
314 3 0.00
315 155 0.09
316 8 0.00
318 106 0.06
320 1 0.00
326 11 0.01
327 166 0.10
328 28 0.02
330 7 0.00
331 68 0.04
332 177 0.10
333 481 0.28
334 51 0.03
335 154 0.09
336 182 0.11
337 1 0.00
338 62 0.04
339 1 0.00
340 1 0.00
341 3 0.00
342 1 0.00
343 39 0.02
344 13 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (334 bp):
AAAAACGCATTCCGGGGCGCCGGCTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCGTGAAATA
TCTATATTCATCTAACCAAATCTCAGCAACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGA
ATCTTGTTTCGATATACTTAGAAATTAAATCAGAAAAAATAAGAAAAACGATATTAGAAGCGTGA
AAAGCCCTCCAATCTTTTTAGTGCTGAATTATATATTGTTAACGAGTATTTTTGATAAAAAAAAT
TGAGGAAAAATTTTTCGGGTCAATATTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
GTTTTGGCT
Found at i:10191 original size:20 final size:20
Alignment explanation
Indices: 10166--10216 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
10156 ATGCTCTTTG
*
10166 GGCCCAGTTTGCCCAATTTC
1 GGCCCATTTTGCCCAATTTC
10186 GGCCCATTTTGCCCAATTTC
1 GGCCCATTTTGCCCAATTTC
10206 GGCCCATTTTG
1 GGCCCATTTTG
10217 AACCCAAGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.14, C:0.33, G:0.20, T:0.33
Consensus pattern (20 bp):
GGCCCATTTTGCCCAATTTC
Found at i:14210 original size:1 final size:1
Alignment explanation
Indices: 14204--14229 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
14194 GAAAATTAAG
14204 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
14230 GGGAAATCTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:16268 original size:18 final size:18
Alignment explanation
Indices: 16226--16279 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 18
16216 AGAATCAGAA
* * *
16226 TCTGAAGCTGAAGCTGAC
1 TCTGAATCTGAAGATGAG
*
16244 TCTGAATCTGAAGGTGAG
1 TCTGAATCTGAAGATGAG
*
16262 TCTGAATCAGAAGATGAG
1 TCTGAATCTGAAGATGAG
16280 CTATACCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (18 bp):
TCTGAATCTGAAGATGAG
Found at i:17970 original size:100 final size:100
Alignment explanation
Indices: 17797--17997 Score: 402
Period size: 100 Copynumber: 2.0 Consensus size: 100
17787 ACGTAATTTG
17797 AGGCTTAGTAAACAAATAACCAGAATATTCTCAACCCTAAATTTATCGAAACTCAATACAATAAT
1 AGGCTTAGTAAACAAATAACCAGAATATTCTCAACCCTAAATTTATCGAAACTCAATACAATAAT
17862 AGAATAACAATAATTTGAGATTTGATAAACAAATA
66 AGAATAACAATAATTTGAGATTTGATAAACAAATA
17897 AGGCTTAGTAAACAAATAACCAGAATATTCTCAACCCTAAATTTATCGAAACTCAATACAATAAT
1 AGGCTTAGTAAACAAATAACCAGAATATTCTCAACCCTAAATTTATCGAAACTCAATACAATAAT
17962 AGAATAACAATAATTTGAGATTTGATAAACAAATA
66 AGAATAACAATAATTTGAGATTTGATAAACAAATA
17997 A
1 A
17998 CCATAAACTT
Statistics
Matches: 101, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 101 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.27
Consensus pattern (100 bp):
AGGCTTAGTAAACAAATAACCAGAATATTCTCAACCCTAAATTTATCGAAACTCAATACAATAAT
AGAATAACAATAATTTGAGATTTGATAAACAAATA
Found at i:18303 original size:100 final size:100
Alignment explanation
Indices: 18088--18305 Score: 228
Period size: 100 Copynumber: 2.2 Consensus size: 100
18078 ATTAGTCGCT
* * * * * * *
18088 CAATGATACTATCGATGTCAATGTATTCGTTACCAACTCAATGTTATTAGTTGTGTATTCCATAT
1 CAATGATACAACCAATGTCAATGTATTCATTACCAACTCAATGTTACTAGGTGTGCATTCCATAT
* * * * *
18153 GATACCAGCTCGAAATATTATCAATATGAGTTGCT
66 GATACCAACTCGAAAGATTATCAATATGAATTCCA
* *
18188 CAATGATACTACCAATGTCAATGTATTCATTA-CAGACTCAATGTTACT-GGTGTGCATTCCATG
1 CAATGATACAACCAATGTCAATGTATTCATTACCA-ACTCAATGTTACTAGGTGTGCATTCCATA
* *
18251 TGATATCAACTCGATAGATTATCAATAT-ACATTCCA
65 TGATACCAACTCGAAAGATTATCAATATGA-ATTCCA
18287 CAA-GATACCAACCCAATGT
1 CAATGATA-CAA-CCAATGT
18306 TATATATAAA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
98 5 0.05
99 46 0.46
100 48 0.48
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (100 bp):
CAATGATACAACCAATGTCAATGTATTCATTACCAACTCAATGTTACTAGGTGTGCATTCCATAT
GATACCAACTCGAAAGATTATCAATATGAATTCCA
Found at i:21097 original size:23 final size:23
Alignment explanation
Indices: 21059--21140 Score: 60
Period size: 30 Copynumber: 3.3 Consensus size: 23
21049 CACATGTCAA
**
21059 CTCTTAAATCTTGTATGTATAAT
1 CTCTTAAATCCGGTATGTATAAT
21082 CTCTTAAATCCGGTATCCTACATGTATAAT
1 CTCTTAAATCCGG-----T--ATGTATAAT
21112 CTCTTAAATCCGG--TGTATAAT
1 CTCTTAAATCCGGTATGTATAAT
*
21133 CTGTTAAA
1 CTCTTAAA
21141 CTACTCGAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
21 15 0.31
23 11 0.22
28 1 0.02
30 22 0.45
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.40
Consensus pattern (23 bp):
CTCTTAAATCCGGTATGTATAAT
Found at i:35496 original size:91 final size:93
Alignment explanation
Indices: 35381--35565 Score: 295
Period size: 92 Copynumber: 2.0 Consensus size: 93
35371 TTGAAGCACA
* * *
35381 TTCGAGTATGTAAACTTTGCTGAACTTTAGATTTGGTTCTTATCGC-TTCATAGTTTAATTATCT
1 TTCGAGTATGTAAACTTTGCTGAACTTTAGACTTGATTCTTATCGCTTTCATAGTTTAATTAACT
*
35445 CCAGAATATAGAG-AAAGGTCTGTGATTC
66 CCAGAATATAG-GTAAACGTCTGTGATTC
35473 TTCGAGTATGT-AACTTTGCTGAACTTTAGACTTGATTCTTATCGCTTTCATAGTTTAATTAACT
1 TTCGAGTATGTAAACTTTGCTGAACTTTAGACTTGATTCTTATCGCTTTCATAGTTTAATTAACT
*
35537 CTAGAATATAGGTAAACGTCTGTGATTC
66 CCAGAATATAGGTAAACGTCTGTGATTC
35565 T
1 T
35566 ATATTATTAA
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
91 33 0.38
92 53 0.62
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (93 bp):
TTCGAGTATGTAAACTTTGCTGAACTTTAGACTTGATTCTTATCGCTTTCATAGTTTAATTAACT
CCAGAATATAGGTAAACGTCTGTGATTC
Found at i:45761 original size:66 final size:66
Alignment explanation
Indices: 45686--45817 Score: 255
Period size: 66 Copynumber: 2.0 Consensus size: 66
45676 TACTGGCTTA
45686 AAATCAGTTTTATGTAAATGCTAATGAACTTGTTAGCTTCTGGCGTTGGTAGATAGGTTGGTAAA
1 AAATCAGTTTTATGTAAATGCTAATGAACTTGTTAGCTTCTGGCGTTGGTAGATAGGTTGGTAAA
45751 G
66 G
*
45752 AAATCAGTTTTATGTAAATGCTAATGAACTTGTTAGCTTCTTGCGTTGGTAGATAGGTTGGTAAA
1 AAATCAGTTTTATGTAAATGCTAATGAACTTGTTAGCTTCTGGCGTTGGTAGATAGGTTGGTAAA
45817 G
66 G
45818 TAAAAATCAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.29, C:0.09, G:0.25, T:0.37
Consensus pattern (66 bp):
AAATCAGTTTTATGTAAATGCTAATGAACTTGTTAGCTTCTGGCGTTGGTAGATAGGTTGGTAAA
G
Found at i:65382 original size:16 final size:15
Alignment explanation
Indices: 65356--65385 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
65346 TATGGTATAG
65356 ATTTTTTTTTTTGGA
1 ATTTTTTTTTTTGGA
65371 ATTTTGTTTTTTTGG
1 ATTTT-TTTTTTTGG
65386 CCAGCGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.73
Consensus pattern (15 bp):
ATTTTTTTTTTTGGA
Found at i:67542 original size:20 final size:21
Alignment explanation
Indices: 67508--67546 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
67498 ACATTGACAA
*
67508 ATTTTTTTCATATTTTAACAC
1 ATTTTTGTCATATTTTAACAC
67529 ATTTTTGTCA-ATTTTAAC
1 ATTTTTGTCATATTTTAAC
67547 CACTCTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.28, C:0.13, G:0.03, T:0.56
Consensus pattern (21 bp):
ATTTTTGTCATATTTTAACAC
Found at i:79275 original size:31 final size:32
Alignment explanation
Indices: 79231--79303 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
79221 TCCCACCCTC
79231 CTCTGTTTTTCCTCTGTTCCTT-AACAATAACA
1 CTCTG-TTTTCCTCTGTTCCTTAAACAATAACA
** * *
79263 CTCTGTTTTCCTCTGTTTTTTAAACGATAGCA
1 CTCTGTTTTCCTCTGTTCCTTAAACAATAACA
79295 CTCTGTTTT
1 CTCTGTTTT
79304 TTTCCCTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
31 14 0.39
32 22 0.61
ACGTcount: A:0.18, C:0.25, G:0.10, T:0.48
Consensus pattern (32 bp):
CTCTGTTTTCCTCTGTTCCTTAAACAATAACA
Found at i:85193 original size:439 final size:435
Alignment explanation
Indices: 84382--85416 Score: 1263
Period size: 439 Copynumber: 2.4 Consensus size: 435
84372 ATAGATTGTC
* * * * * * * *
84382 AATCGAAATCACAAAATTT-GAAAAGTATTTTTTAGAATTGAAACATGAAAATTAGCTTTTGA-A
1 AATCAAAACCACAAAATTTAG-GAAGCATTTTTTTGAATTAAAACATAAAAATTAGCTTTTGAGT
* * *
84445 TCTTTCATGAAAGTTGTAGATCATAAAATTACCTTTTAATAGACACCTGAATTACCTTAATTGGA
65 TC-TTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATTACCTTAATCGGA
* * *
84510 CAAATAAAACAAAGAAAATTAAAAATAATGAAGCGTTAAATCGAATAAGATAGAATTTGTAAATG
129 CAAATAGAAC-AA-AAAA-TAAAAA-AATAAAGCGTTAAATCGAATAAGATAGAATTTGTAAAGG
* * *
84575 ACTAAGTAGCATAAAATAGAAAAGTATGAGGGTCATTTGACAACTAATTCAAATAAGAAAATATT
190 ACTAAGTAGCATAAAATAGAAAAATATGAGGGTCATTTGACAAATAATCCAAATAAGAAAATATT
* * *
84640 TCTTAATGGATATCTTAAAATATAAAAATTCCCTTTTGAACCCTTAATGAAACTCGTAGATCAAA
255 TCTTAATGGAGATCTTAAAACATAAAAATTCCCTTTTAAACCCTTAATGAAACTCGTAGATCAAA
** * *
84705 TTAACTTTCGGTTTTCTCATGAAAGTCGTAGATCATACAATAACCTTTTAACTGACACTTGAATA
320 TTAACTTTCGGTCCTCTCATGAAAGTCGTAAATCATACAATAACCTTTTAACTGACACTTCAATA
* * * * *
84770 ACTTTAATTGGACATGTGGATC-GAAAATTATATGGTATTAAATAGACCAAA
385 ACTTCAATCGGACATGTGGA-CAAAAAATTATACGATATTAAATAGACCAAA
* * * *
84821 AATCGAAACGACCAAATTTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTTGCTTTTGAGTT
1 AATCAAAACCACAAAATTTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTAGCTTTTGAGTT
* * *
84886 CTTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATAAACTTAATCAGACA
66 CTTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATTACCTTAATCGGACA
* *
84951 GATAGAACAAAAAATAAAAAAATAAATC-TTAAA-CGTTAGATTAAGATAGAATTTGTAAAGGAC
131 AATAGAACAAAAAATAAAAAAATAAAGCGTTAAATCG--A-A-TAAGATAGAATTTGTAAAGGAC
* * * * * *
85014 TAAGTAGTATAAAGTAGAAAAATATGAGGGTCATTTGATAAATAATCCAAATGAGAAAATGTTTG
192 TAAGTAGCATAAAATAGAAAAATATGAGGGTCATTTGACAAATAATCCAAATAAGAAAATATTTC
* * * *
85079 TTAATGGAGATCTTGAAGCATAAAAATTCTCTTTTAAACCCTTCATGAAACTCGTAGATCAAATT
257 TTAATGGAGATCTTAAAACATAAAAATTCCCTTTTAAACCCTTAATGAAACTCGTAGATCAAA-T
* * * *
85144 TAGCTTTTCGGGTCCT-TCATGAAAGTCGTAAATTATGCAATGACCTTTTAACTGACACTTCAAT
321 TAAC-TTTC-GGTCCTCTCATGAAAGTCGTAAATCATACAATAACCTTTTAACTGACACTTCAAT
* * *
85208 AACTTCAATCGGACATGTGGACAAAAAATTATACGATATTAAATTGACCGAC
384 AACTTCAATCGGACATGTGGACAAAAAATTATACGATATTAAATAGACCAAA
* * * * * * *
85260 AATCAAAACCATAAAATTTCGGAAGCATTTTTCTAAATCAAAACATTAAAATTGGCTTTTGAGTT
1 AATCAAAACCACAAAATTTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTAGCTTTTGAGTT
* * * * * *
85325 CTCCATGAAAATTTTAGATCATGAAAATATCTTTTAATAGACACTTGAATTACCTTAATCGGACA
66 CTTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATTACCTTAATCGGACA
* *
85390 AATTGAAAAAAAAATAAAAAAAATAAA
131 AATAGAACAAAAAAT-AAAAAAATAAA
85417 AGATAACGCG
Statistics
Matches: 510, Mismatches: 75, Indels: 21
0.84 0.12 0.03
Matches are distributed among these distances:
433 2 0.00
434 5 0.01
435 7 0.01
436 7 0.01
437 137 0.27
438 7 0.01
439 327 0.64
440 18 0.04
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (435 bp):
AATCAAAACCACAAAATTTAGGAAGCATTTTTTTGAATTAAAACATAAAAATTAGCTTTTGAGTT
CTTCATGAAAGTTGTAGATCATGAAATTACCTTTTAATAGACACATGAATTACCTTAATCGGACA
AATAGAACAAAAAATAAAAAAATAAAGCGTTAAATCGAATAAGATAGAATTTGTAAAGGACTAAG
TAGCATAAAATAGAAAAATATGAGGGTCATTTGACAAATAATCCAAATAAGAAAATATTTCTTAA
TGGAGATCTTAAAACATAAAAATTCCCTTTTAAACCCTTAATGAAACTCGTAGATCAAATTAACT
TTCGGTCCTCTCATGAAAGTCGTAAATCATACAATAACCTTTTAACTGACACTTCAATAACTTCA
ATCGGACATGTGGACAAAAAATTATACGATATTAAATAGACCAAA
Done.