Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022420.1 Corchorus olitorius cultivar O-4 contig22453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8373
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Found at i:1217 original size:269 final size:269
Alignment explanation
Indices: 723--1259 Score: 977
Period size: 269 Copynumber: 2.0 Consensus size: 269
713 ATATCAATGA
723 TACAAGCTGCTGCGTTTTACTATAATAATTAGTTAATTTTCTTTAAGTTATTTTGTTTCAGTTAT
1 TACAAGCTGCTGCGTTTTACTATAATAATTAGTTAATTTTCTTTAAGTTATTTTGTTTCAGTTAT
*
788 TTCCTTTTGCACAACTCTTATTAGTGGCATGATTCTAGGCAATCATTCTAGGTAGTTATCCTTGA
66 TTCCTTTTGCACAACTCTTATTAGTGGCATGATTCTAGGCAATCACTCTAGGTAGTTATCCTTGA
*
853 ACACATCTCTTTATATACCCATGTTGTAAACCAATTTGTAACAAGAAGTAATATTTTCTCATCTA
131 ACACATCTCTTTATATACCCACGTTGTAAACCAATTTGTAACAAGAAGTAATATTTTCTCATCTA
*
918 AAATTTCTATTCTCTTCTTTCTCTGCTCTGTCCATCTATTTCTTCCTATTTCTTTCTTCCTAAAT
196 AAATTTCTATTCTCTTCTTTCTCTGCTCTGTCCATCTATTTCTCCCTATTTCTTTCTTCCTAAAT
*
983 TTCCTTCAC
261 TCCCTTCAC
*
992 TACAAGTTGCTGCGTTTTACTATAATAATTAGTTAATTTTCTTTAAGTTATTTTGTTTCAGTTAT
1 TACAAGCTGCTGCGTTTTACTATAATAATTAGTTAATTTTCTTTAAGTTATTTTGTTTCAGTTAT
*
1057 TTCCTTTTGCACAACTTTTATTAGTGGCATGATTCTAGGCAATCACTCTAGGTAGTTATCCTTGA
66 TTCCTTTTGCACAACTCTTATTAGTGGCATGATTCTAGGCAATCACTCTAGGTAGTTATCCTTGA
* *
1122 ACACATCTCTTTATATACCCACGTTGTAAACCAGTTTGTAATAAGAAGTAATATTTTCTCATCTA
131 ACACATCTCTTTATATACCCACGTTGTAAACCAATTTGTAACAAGAAGTAATATTTTCTCATCTA
*
1187 AAATTTCTATTCTCTTCTTTCT-TGGCTCTGTCCATCTATTTCTCCCTTTTTCTTTCTTCCTAAA
196 AAATTTCTATTCTCTTCTTTCTCT-GCTCTGTCCATCTATTTCTCCCTATTTCTTTCTTCCTAAA
1251 TTCCCTTCA
260 TTCCCTTCA
1260 TTCCTAACAT
Statistics
Matches: 258, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
268 1 0.00
269 257 1.00
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.45
Consensus pattern (269 bp):
TACAAGCTGCTGCGTTTTACTATAATAATTAGTTAATTTTCTTTAAGTTATTTTGTTTCAGTTAT
TTCCTTTTGCACAACTCTTATTAGTGGCATGATTCTAGGCAATCACTCTAGGTAGTTATCCTTGA
ACACATCTCTTTATATACCCACGTTGTAAACCAATTTGTAACAAGAAGTAATATTTTCTCATCTA
AAATTTCTATTCTCTTCTTTCTCTGCTCTGTCCATCTATTTCTCCCTATTTCTTTCTTCCTAAAT
TCCCTTCAC
Found at i:5584 original size:1000 final size:999
Alignment explanation
Indices: 3486--7657 Score: 6225
Period size: 1000 Copynumber: 4.2 Consensus size: 999
3476 CCATCACGAG
* * ** *
3486 TTTAGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGAGT
1 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * * * *
3551 CAATTTTGAAAGATTTTTGGCGGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
* * * *
3616 CAACCACAATACATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
3681 ATAATTTCAGAAAAAATATGG-AAAACGATATTAGAAGTGTGAAAAACCTTAAAAATATTTTTTG
196 A-AAATTCAGAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAACCTT-AAAATATTTTTGG
* * *
3745 CGTTGAATTATATGATTTTTCTGAGTATTGTGTCAAAAAATTGGGGTAAAACTTTTTCGGGTCAG
258 CGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGCAAAAATTTTTCGGGTCAG
* * *
3810 TTTTTTGTAAAATTTTAGCCGAAATCGTG---T-ACCATCAC-GATTTTTAAGCTAAAAATGTGT
323 TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAG-TTTTT-GGCTAAAAATGCGT
* *
3870 TTTGGGACCCTGACTCAGTTTTGAATGATTTTTGGCATAAAGACTTCTCGAAATAGCTATATTCA
386 TTTGGGGCCCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCA
* * *
3935 TCT-AATCAAATCTTTTAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGT
451 TCTAAAT-AAATCTCTCAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATCTGAATCTTGT
*
3999 TTCGATTTAATTAGAAATAAATTCAGAAAAAAATTGG-AAAACGATATTAGAAGCGTGAAAAACC
515 TTCGATTTAATAAGAAA-AAATTCAGAAAAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAACC
* *
4063 TTAAAATATTTTTGGTGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAATTGGGGAAA
578 TTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGC-AAAAAATTGGGGAAA
* * * * *
4128 AATTTTTCGGGTCTGTTTTTTTGCAAAATTTTAGCCGAAATCA-TGTA--ATCACAGTTGTTGGC
642 AACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCAAAATCACT-AACCATCACAGTTTTTGGC
** *
4190 TTGAAATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTTTGGGCAGAAAGACTTCTCGTAAT
705 TAAAAATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTTT-GGCAGAAAGACTTCTCGAAAT
* *
4255 ATCTATATTCATCTAAATAAATCTCTCAACCACAATGTATTTACAGATTTATTTTTACGAGTATC
769 ATCTATATTCATCTAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATC
*
4320 TGAATCTTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATTGACAAACGATATTAGAAGCG
834 TGAATCTTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCG
* *
4385 TGAGAAACCTTAAAAT-TTTATGGCGTTGAATTATATGATTTTTCTGCGTATTGAAGCAAAAAAT
899 TGAGAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGAAGCAAAAAAT
* *
4449 TGGGGAAAAATTTATCGGGTCTGTTTTTTTGCAAAAT
964 TGGGGAAAAATTTTTCGGGTCAG-TTTTTTGCAAAAT
* *
4486 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTAGGGCCCTGACT
1 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* *
4551 CAGTTTTGCATGATTTTGGGCAGAAA-ACTTCTCGTAATATCTATATTTCATCTAAACAAATCTC
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATA-TTCATCTAAACAAATCTC
* *
4615 TCATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
130 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* *
4680 AAAAAGTTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAATTATTTTTGGG
195 AAAAA-TTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
4744 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAAATTTTTCGGGTCAGT
259 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGCAAAAATTTTTCGGGTCAGT
* * * *
4808 TTTTTACAAAATTTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTT
324 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAATGCGTTTT
* * **
4873 GAGGCCCTGACTCACTTTTGCGTGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCT
389 GGGGCCCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCT
* *
4938 -AATCAAATCTTTCAGCCACAATGCATTTTC-GTAGTTATTTTTACGAGTATCTGAATCTTGTTT
454 AAAT-AAATCTCTCAGCCACAATGCATTTACAG-AGTTATTTTTACGAGTATCTGAATCTTGTTT
*
5001 CGATTTAATAAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAACCTT
517 CGATTTAATAAGAAA-AAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTT
* *
5066 AAAATATTTTTTGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGTGGAAAAAC
580 AAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAAC
*
5131 TTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCAAAATCA-T-ACCATCA-GGCTTTTTGGCTAAA
645 TTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCAAAATCACTAACCATCACAG-TTTTTGGCTAAA
* * *
5193 AATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTTTGTCAGAAACACTTCTCGTAATATCTA
709 AATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTTTGGCAGAAAGACTTCTCGAAATATCTA
*
5258 TATTCATCTAAATAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAAT
774 TATTCATCTAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAAT
*
5323 CCTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAGA
839 CTTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAGA
* *
5388 AACCTTAAAAT-TTTTTGGCGTTGAATTATATGATTTTTCTGCGTATTGAAGC-AAAAATAGGGG
904 AACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGAAGCAAAAAATTGGGG
* *
5451 AAAAATTTTTCGGGTCTGTTTTTTTGTAAAAT
969 AAAAATTTTTCGGGTCAG-TTTTTTGCAAAAT
* * * *
5483 TTTTGCCGAAATCGTGTACGTTAACCATCACGGTTTCTGGATAAAAATGCGTTTTGGGGCCCTGA
1 TTTAGCCGAAATCATGTAC--TAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGA
* * * * *
5548 CTCAGTTTTGAATGATTTTTGGCTGAAAGTCTTCTCGAAATATCAATATTCATCTAATCAAATCT
64 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCT
* * * *
5613 CTCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATATGAAACTTGTTTCGATTTAATTAG
129 CTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
* * *
5678 ATATAAATTCAGAAAAAAATGTAAAAACGATATTAGAAGCGTGAAAATCCTTAAAATATTTTTGG
194 A-AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
* ** *
5743 CATAT-AATTATATGATTTTTCTGAGTATTGTATCAAAAAATTGGGG-AAAAATTTATCGGGTCA
258 CGT-TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGCAAAAATTTTTCGGGTCA
* * * *
5806 GATTTTTGCAAAATTTTAGCCGAAATCGTGAACTAACAATCACAGTTTTTGGCTAAAAATGTGTT
322 GTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAATGCGTT
* *
5871 TTGGGGCCCTGACTCAGTTTTGTATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCAT
387 TTGGGGCCCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCAT
* *
5936 CTAAATAAATCTCTCAGCCACAATCCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTT
452 CTAAATAAATCTCTCAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATCTGAATCTTGTTT
* * * *
6001 CCATTTAATTAGAAAAAATGCAG-AAAAAATGGAAAAACGACATTAGAAGCGTGAAAAACCTTAA
517 CGATTTAATAAGAAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAA
* * *
6065 AATATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTTGCAAAAAATTAGGGTAAAACTT
582 AATATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAACTT
* * * *
6130 TTCAGGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGTTAA
647 TTCGGGTCAGTTTTTTGCAAAATTTTAGCCAAAATC----ACTAACCATCACAGTTTTTGGCTAA
* *
6195 AAATGCGTTTTGGGGCCCTGACTCAGTTTTGAATGATTTATGGCAGAAAGACTTCTCGAAATATC
708 AAATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTT-TGGCAGAAAGACTTCTCGAAATATC
* ** **
6260 TATATTCATCT-AATCAAATCTCTCAGCCACAATCCATTTATGGGGTTATTTTTACGAGTATCTG
772 TATATTCATCTAAAT-AAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTG
*
6324 AATCTTGTTTCGATTTAATTAG---AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTG
836 AATCTTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTG
* * **
6386 A-AAAGCCTTAAAATATTTTTGGCATTGAATTATAAGATTTTTCTGAGTATTGTGGCAAAGAAAT
901 AGAAA-CCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGAAGCAAA-AAAT
6450 TGGGGAAAAATTTTTCGGGTCAGTTTTTTGCAAAAT
964 TGGGGAAAAATTTTTCGGGTCAGTTTTTTGCAAAAT
*
6486 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
*
6551 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
* * *
6616 CATCCACAATGCATTTACATATTTATTTTTACGAGTATTTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
6681 AAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
196 AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
* * *
6745 TGAATTATATGATTTTTCTGAATATTGTGGCAAAAAAGTGGGGCAAAAA-TTTTCGGGTAAGTTT
261 TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGCAAAAATTTTTCGGGTCAGTTT
* * *
6809 TTTGCAAAAATTTAGCCGAAATCGTGTACTAACCATCATAGTTTTTGGCTAAAAAAGCGTTTTGG
326 TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAATGCGTTTTGG
*
6874 GGCCCTGACTC-GTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA
391 GGCCCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAA
* * * *
6938 ATAAATCTCTCAGCCACAATGCATTTACAGATTTAGTTTTACAAGTATCTTAATCTTGTTTCGAT
456 ATAAATCTCTCAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGAT
*
7003 TTAATTAA-AAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAATCGTGAAAAACCTTAAAAT
521 TTAA-TAAGAAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAAT
** *
7067 ATTTTTGGCGTTGAATTATATGATTTTTCTGCGTATTGTGGCAAAAAATTGGGGTAAAAATTTTT
585 ATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGG-AAAAACTTTT
* * *
7132 CGGGTCTGTTTTCTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAA
649 CGGGTCAGTTTT-TTGCAAAATTTTAGCC-AAA--AT-CACTAACCATCACAGTTTTTGGCTAAA
*
7197 AATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCT
709 AATGTGTTTTGGGGCCCTGACTCAGTTTTGCATGA-TTTTGGCAGAAAGACTTCTCGAAATATCT
* * *
7262 ATATTCATCTAAACAAATCTCTCATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAA
773 ATATTCATCTAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAA
*
7327 TCTTGTTTCGATTTAATTAGAAAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAA
838 TCTTGTTTCGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTG-A
* **
7392 CAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGG
902 GAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGAAGCAAAAAATTGG
*
7457 GGAAAAACTTTTACGGGTCAGTTTTTTGCAAAAT
967 GGAAAAA-TTTTTCGGGTCAGTTTTTTGCAAAAT
* * *
7491 TTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACT
1 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * *
7556 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
7621 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
7658 CTAACCATCA
Statistics
Matches: 2896, Mismatches: 223, Indels: 101
0.90 0.07 0.03
Matches are distributed among these distances:
997 232 0.08
998 387 0.13
999 551 0.19
1000 695 0.24
1001 478 0.17
1002 45 0.02
1003 88 0.03
1004 180 0.06
1005 237 0.08
1006 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (999 bp):
TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGCAAAAATTTTTCGGGTCAGTTT
TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAATGCGTTTTGG
GGCCCTGACTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAA
ATAAATCTCTCAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGAT
TTAATAAGAAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATA
TTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAACTTTTCG
GGTCAGTTTTTTGCAAAATTTTAGCCAAAATCACTAACCATCACAGTTTTTGGCTAAAAATGTGT
TTTGGGGCCCTGACTCAGTTTTGCATGATTTTGGCAGAAAGACTTCTCGAAATATCTATATTCAT
CTAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTT
CGATTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAGAAACCTTA
AAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGAAGCAAAAAATTGGGGAAAAATT
TTTCGGGTCAGTTTTTTGCAAAAT
Found at i:5686 original size:665 final size:666
Alignment explanation
Indices: 3486--7657 Score: 6213
Period size: 665 Copynumber: 6.3 Consensus size: 666
3476 CCATCACGAG
* ** *
3486 TTTAGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGAGT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * *
3551 CAATTTTGAAAGATTTTTGGCGGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
* *
3616 CAACCACAATACATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
* * *
3681 ATAATTTCAGAAAAAATATGG-AAAACGATATTAGAAGTGTGAAAAACCTTAAAAATATTTTTTG
196 ATAAATTCAGAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAACCTT-AAAATATTTTTGG
* *
3745 CGTTGAATTATATGATTTTTCTGAGTATTGTGTCAAAAAATTGGGGTAAAACTTTTTCGGGTCAG
259 CGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAA-ATTTTCGGGTCAG
* * * *
3810 TTTTTTGTAAAATTTTAGCCGAAATCGTG---T-ACCATCACGATTTTTAAGCTAAAAATGTGTT
322 TTTTTTGCAAAATTTTAGCCGAAA-CATGCACTAACCATCACGGTTTTT-GGCTAAAAATGTGTT
* * * *
3871 TTGGGACCCTGACTCAGTTTTGAATGATTTTTGGCATAAAGACTTCTCGAAATAGCTATATTCAT
385 TTGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCAT
* * * *
3936 CT-AATCAAATCTTTTAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTT
450 CTAAAT-AAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTT
4000 TCGATTTAATTAGAAATAAATTCAGAAAAAAATTGG-AAAACGATATTAGAAGCGTGAAAAACCT
514 TCGATTTAATTAGAAA-AAATTCAG-AAAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAACCT
* *
4064 TAAAATATTTTTGGTGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAATTGGGGAAAA
576 TAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGC-AAAAAATAGGGGAAAA
*
4129 ATTTTTCGGGTCTGTTTTTTTGCAAAAT
640 ATTTTTCGGGTCAG-TTTTTTGCAAAAT
* * * ** *
4157 TTTAGCCGAAATCATG---T-A--ATCACAGTTGTTGGCTTGAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * *
4216 CAGTTTTGCATGATTTTGGGCAGAAAGACTTCTCGTAATATCTATATTCATCTAAAT-AAATCTC
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTC
* * * *
4280 TCAACCACAATGTATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
130 TCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* * * *
4345 TAA-AAATTCAGAAAAAAATTGACAAACGATATTAGAAGCGTGAGAAACCTTAAAAT-TTTATGG
195 -AATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
* ** *
4408 CGTTGAATTATATGATTTTTCTGCGTATTGAAGCAAAAAATTGGGGAAAAATTTATCGGGTCTGT
259 CGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTT-TCGGGTCAG-
*
4473 TTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTT
322 TTTTTTGCAAAATTTTAGCCGAAA-CATGCACTAACCATCACGGTTTTTGGCTAAAAATGTGTTT
* * *
4538 TAGGGCCCTGACTCAGTTTTGCATGATTTTGGGCAGAAA-ACTTCTCGTAATATCTATATTTCAT
386 TGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATA-TTCAT
* * *
4602 CTAAACAAATCTCTCATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTT
450 CTAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTT
4667 CGATTTAATTAGAAAAAAGTTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAA
515 CGATTTAATTAGAAAAAA-TTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAA
* * *
4732 ATTATTTTTGGGGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTT
579 AATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAAATTT
*
4797 TTCGGGTCAGTTTTTTACAAAAT
644 TTCGGGTCAGTTTTTTGCAAAAT
* * *
4820 TTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* ** * *
4885 CACTTTTGCGTGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATCAAATCTTT
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
* * *
4950 CAGCCACAATGCATTTTCGTAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATAAGAA
131 CAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
* *
5015 ATAAATTCAGAAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAACCTTAAAATATTTTTTGC
196 ATAAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
* *
5080 GTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGTGGAAAAACTTTTCGGGTCAGTT
260 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAA-TTTTCGGGTCAGTT
5145 TTTTGCAAAATTTTAGCC-AAA-AT-CA-T-ACCATCA-GGCTTTTTGGCTAAAAATGTGTTTTG
324 TTTTGCAAAATTTTAGCCGAAACATGCACTAACCATCACGG-TTTTTGGCTAAAAATGTGTTTTG
* * *
5204 GGGCCCTGACTCAGTTTTGCATGA-TTTTGTCAGAAACACTTCTCGTAATATCTATATTCATCTA
388 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTA
* *
5268 AATAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATCCTGTTTCGA
453 AATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGA
* *
5333 TTTAATTAGATAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAGAAACCTTAAAA
518 TTTAATTAGA-AAAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAA
* **
5398 T-TTTTTGGCGTTGAATTATATGATTTTTCTGCGTATTGAAGC-AAAAATAGGGGAAAAATTTTT
581 TATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAAATTTTT
* *
5461 CGGGTCTGTTTTTTTGTAAAAT
646 CGGGTCAG-TTTTTTGCAAAAT
* * *
5483 TTTTGCCGAAATCGTGTACGTTAACCATCACGGTTTCTGGATAAAAATGCGTTTTGGGGCCCTGA
1 TTTAGCCGAAATCGTGTAC--TAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGA
* * *
5548 CTCAGTTTTGAATGATTTTTGGCTGAAAGTCTTCTCGAAATATCAATATTCATCTAATCAAATCT
64 CTCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCT
* *
5613 CTCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATATGAAACTTGTTTCGATTTAATTAG
129 CTCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
* * *
5678 ATATAAATTCAGAAAAAAATGTAAAAACGATATTAGAAGCGTGAAAATCCTTAAAATATTTTTGG
194 AAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
* **
5743 CATAT-AATTATATGATTTTTCTGAGTATTGTATCAAAAAATTGGGGAAAAATTTATCGGGTCAG
259 CGT-TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTT-TCGGGTCAG
* * * * *
5807 ATTTTTGCAAAATTTTAGCCGAAATCGTGAACTAACAATCACAGTTTTTGGCTAAAAATGTGTTT
322 TTTTTTGCAAAATTTTAGCCGAAA-CATGCACTAACCATCACGGTTTTTGGCTAAAAATGTGTTT
*
5872 TGGGGCCCTGACTCAGTTTTGTATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATC
386 TGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATC
*
5937 TAAATAAATCTCTCAGCCACAATCCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTC
451 TAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTC
* * *
6002 CATTTAATTAGAAAAAATGCAGAAAAAATGGAAAAACGACATTAGAAGCGTGAAAAACCTTAAAA
516 GATTTAATTAGAAAAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAA
* * * *
6067 TATTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTTGCAAAAAATTA-GGGTAAAACTTT
581 TATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA-TAGGGGAAAAATTTT
*
6131 TCAGGTCAGTTTTTTGCAAAAT
645 TCGGGTCAGTTTTTTGCAAAAT
* * *
6153 TTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGTTAAAAATGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
*
6218 CAGTTTTGAATGATTTATGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
* * *
6283 CAGCCACAATCCATTTATGGGGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG--
131 CAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
* *
6346 A-AAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTTAAAATATTTTTGGCA
196 ATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCG
*
6410 TTGAATTATAAGATTTTTCTGAGTATTGTGGCAAAGAAATTGGGGAAAAATTTTTCGGGTCAGTT
261 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAA-AAATTGGGGAAAAA-TTTTCGGGTCAGTT
*
6475 TTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTG
324 TTTTGCAAAATTTTAGCCGAAA-CATGCACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTG
6540 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTA
388 GGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTA
* * *
6605 AATAAATCTCTCATCCACAATGCATTTACATATTTATTTTTACGAGTATTTGAATCTTGTTTCGA
453 AATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGA
6670 TTTAATTAGAAAAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATA
518 TTTAATTAGAAAAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATA
*
6735 TTTTTGGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAAGT-GGGGCAAAAA-TTTT
583 TTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA-TAGGGG-AAAAATTTTT
* *
6798 CGGGTAAGTTTTTTGCAAAAA
646 CGGGTCAGTTTTTTGCAAAAT
** *
6819 TTTAGCCGAAATCGTGTACTAACCATCATAGTTTTTGGCTAAAAAAGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
6884 C-GTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCTC
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTC
* * * * *
6947 TCAGCCACAATGCATTTACAGATTTAGTTTTACAAGTATCTTAATCTTGTTTCGATTTAATTA-A
130 TCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* *
7011 AAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAATCGTGAAAAACCTTAAAATATTTTTGGC
195 AATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
* *
7076 GTTGAATTATATGATTTTTCTGCGTATTGTGGCAAAAAATTGGGGTAAAAATTTTTCGGGTCTGT
260 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAAA-TTTTCGGGTCAGT
*
7141 TTTCTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTT
323 TTT-TTGCAAAATTTTAGCCGAAA-CATGCACTAACCATCACGGTTTTTGGCTAAAAATGTGTTT
*
7206 TGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATC
386 TGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATC
* * *
7271 TAAACAAATCTCTCATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTTC
451 TAAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTC
*
7336 GATTTAATTAGAAAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAACAAACCTTA
516 GATTTAATTAG-AAAAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAA-AAACCTTA
*
7401 AAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACT
578 AAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAAA-T
*
7466 TTTACGGGTCAGTTTTTTGCAAAAT
642 TTTTCGGGTCAGTTTTTTGCAAAAT
* * *
7491 TTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * *
7556 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTATCTAAAT-AAATCTC
66 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTC
* *
7620 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
130 TCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTA
7658 CTAACCATCA
Statistics
Matches: 3200, Mismatches: 239, Indels: 122
0.90 0.07 0.03
Matches are distributed among these distances:
661 3 0.00
662 39 0.01
663 262 0.08
664 280 0.09
665 664 0.21
666 557 0.17
667 142 0.04
668 367 0.11
669 211 0.07
670 225 0.07
671 268 0.08
672 87 0.03
673 95 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (666 bp):
TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
CAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
ATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCG
TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTCGGGTCAGTTTT
TTGCAAAATTTTAGCCGAAACATGCACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGG
CCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT
AAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTT
AATTAGAAAAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTT
TTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATAGGGGAAAAATTTTTCGGGT
CAGTTTTTTGCAAAAT
Found at i:6207 original size:333 final size:334
Alignment explanation
Indices: 3486--7657 Score: 6233
Period size: 333 Copynumber: 12.5 Consensus size: 334
3476 CCATCACGAG
* ** * *
3486 TTTAGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGAGT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* * * *
3551 CAATTTTGAAAGATTTTTGGCGGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTC
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCTC
* * * *
3615 TCAACCACAATACATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
130 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* * *
3680 AATAATTTCAGAAAAAATATGG-AAAACGATATTAGAAGTGTGAAAAACCTTAAAAATATTTTTT
195 AA-AAATTCAGAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAACCTT-AAAATATTTTTG
* *
3744 GCGTTGAATTATATGATTTTTCTGAGTATTGTGTCAAAAAATTGGGGTAAAACTTTTTCGGGTCA
257 GCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAAATTTTTCGGGTCA
*
3809 GTTTTTTGTAAAAT
321 GTTTTTTGCAAAAT
* * *
3823 TTTAGCCGAAATCGTG---T-ACCATCACGATTTTTAAGCTAAAAATGTGTTTTGGGACCCTGAC
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT-GGCTAAAAATGTGTTTTGGGGCCCTGAC
* * *
3884 TCAGTTTTGAATGATTTTTGGCATAAAGACTTCTCGAAATAGCTATATTCATCT-AATCAAATCT
65 TCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCT
* * * *
3948 TTTAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
129 CTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
4013 AAATAAATTCAGAAAAAAATTGG-AAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTG
194 AAA-AAATTCAGAAAAAAA-TGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTG
* *
4077 GTGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAATTGGGGAAAAATTTTTCGGGTCT
257 GCGTTGAATTATATGATTTTTCTGAGTATTGTGGC-AAAAAATTGGGGAAAAATTTTTCGGGTCA
4142 GTTTTTTTGCAAAAT
321 G-TTTTTTGCAAAAT
* * * **
4157 TTTAGCCGAAATCATG---T-A--ATCACAGTTGTTGGCTTGAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* *
4216 CAGTTTTGCATGATTTTGGGCAGAAAGACTTCTCGTAATATCTATATTCATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
* *
4281 CAACCACAATGTATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAT
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA-
* * * *
4346 AAAAATTCAGAAAAAAATTGACAAACGATATTAGAAGCGTGAGAAACCTTAAAAT-TTTATGGCG
195 AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCG
* ** * *
4410 TTGAATTATATGATTTTTCTGCGTATTGAAGCAAAAAATTGGGGAAAAATTTATCGGGTCTGTTT
260 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAG-TT
4475 TTTTGCAAAAT
324 TTTTGCAAAAT
* *
4486 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTAGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* * *
4551 CAGTTTTGCATGATTTTGGGCAGAAA-ACTTCTCGTAATATCTATATTTCATCTAAACAAATCTC
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATA-TTCATCTAAATAAATCTC
* *
4615 TCATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
130 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* *
4680 AAAAAGTTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAATTATTTTTGGG
195 AAAAA-TTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
4744 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAGTT
259 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAGTT
*
4809 TTTTACAAAAT
324 TTTTGCAAAAT
* * * *
4820 TTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* * * *
4885 CACTTTTGCGTGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCT-AATCAAATCTT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCTC
* * *
4949 TCAGCCACAATGCATTTTC-GTAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATAAG
130 TCAGCCACAATGCATTTACAG-ATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
* *
5013 AAATAAATTCAGAAAAAAAATGGAAAAACGATATTAGAAGTGTGAAAAACCTTAAAATATTTTTT
194 AAA-AAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTG
* * *
5078 GCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGTGGAAAAACTTTTCGGGTCAG
257 GCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAG
5143 TTTTTTGCAAAAT
322 TTTTTTGCAAAAT
*
5156 TTTAGCCAAAATC----A-T-ACCATCA-GGCTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGAC
1 TTTAGCCGAAATCGTGTACTAACCATCACGG-TTTTTGGCTAAAAATGTGTTTTGGGGCCCTGAC
* * *
5214 TCAGTTTTGCATGA-TTTTGTCAGAAACACTTCTCGTAATATCTATATTCATCTAAATAAATCTC
65 TCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTC
* *
5278 TCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATCCTGTTTCGATTTAATTAGA
130 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* *
5343 TAAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAGAAACCTTAAAAT-TTTTTGGC
195 -AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
* ** * *
5407 GTTGAATTATATGATTTTTCTGCGTATTGAAGC-AAAAATAGGGGAAAAATTTTTCGGGTCTGTT
259 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAG-T
*
5471 TTTTTGTAAAAT
323 TTTTTGCAAAAT
* * * *
5483 TTTTGCCGAAATCGTGTACGTTAACCATCACGGTTTCTGGATAAAAATGCGTTTTGGGGCCCTGA
1 TTTAGCCGAAATCGTGTAC--TAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGA
* * * *
5548 CTCAGTTTTGAATGATTTTTGGCTGAAAGTCTTCTCGAAATATCAATATTCATCT-AATCAAATC
64 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATC
* * * *
5612 TCTCAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATATGAAACTTGTTTCGATTTAATTA
128 TCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTA
* * *
5677 GATATAAATTCAGAAAAAAATGTAAAAACGATATTAGAAGCGTGAAAATCCTTAAAATATTTTTG
193 GA-AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTG
* ** *
5742 GCATAT-AATTATATGATTTTTCTGAGTATTGTATCAAAAAATTGGGGAAAAATTTATCGGGTCA
257 GCGT-TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCA
*
5806 GATTTTTGCAAAAT
321 GTTTTTTGCAAAAT
* * *
5820 TTTAGCCGAAATCGTGAACTAACAATCACAGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
*
5885 CAGTTTTGTATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
* *
5950 CAGCCACAATCCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCCATTTAATTAGAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
* *
6015 AAAATGCAG-AAAAAATGGAAAAACGACATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
196 AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
* * * * * *
6079 TGAATTATATGATTTTTCTGAATATTGTTGCAAAAAATTAGGGTAAAACTTTTCAGGTCAGTTTT
261 TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAGTTTT
6144 TTGCAAAAT
326 TTGCAAAAT
* * * *
6153 TTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGTTAAAAATGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* *
6218 CAGTTTTGAATGATTTATGGCAGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTC
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCTC
* ** **
6282 TCAGCCACAATCCATTTATGGGGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG-
130 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* *
6346 -AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAGCCTTAAAATATTTTTGGCA
195 AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCG
*
6410 TTGAATTATAAGATTTTTCTGAGTATTGTGGCAAAGAAATTGGGGAAAAATTTTTCGGGTCAGTT
260 TTGAATTATATGATTTTTCTGAGTATTGTGGCAAA-AAATTGGGGAAAAATTTTTCGGGTCAGTT
6475 TTTTGCAAAAT
324 TTTTGCAAAAT
*
6486 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
6551 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
* * *
6616 CATCCACAATGCATTTACATATTTATTTTTACGAGTATTTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
6681 AAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
196 AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
* * *
6745 TGAATTATATGATTTTTCTGAATATTGTGGCAAAAAAGTGGGGCAAAAA-TTTTCGGGTAAGTTT
261 TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAAATTTTTCGGGTCAGTTT
*
6809 TTTGCAAAAA
325 TTTGCAAAAT
** * *
6819 TTTAGCCGAAATCGTGTACTAACCATCATAGTTTTTGGCTAAAAAAGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
*
6884 C-GTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
* * * *
6948 CAGCCACAATGCATTTACAGATTTAGTTTTACAAGTATCTTAATCTTGTTTCGATTTAATTAAAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
*
7013 AAAATTCAGAAAAAAATGGAAAAACGATATTAGAATCGTGAAAAACCTTAAAATATTTTTGGCGT
196 AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
* *
7078 TGAATTATATGATTTTTCTGCGTATTGTGGCAAAAAATTGGGGTAAAAATTTTTCGGGTCTGTTT
261 TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG-AAAAATTTTTCGGGTCAGTTT
7143 TCTTGCAAAAT
325 T-TTGCAAAAT
*
7154 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* *
7219 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAAACAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
* *
7284 CATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG-A
*
7349 AAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAACAAACCTTAAAATATTTTTGGC
195 AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA-AAACCTTAAAATATTTTTGGC
*
7414 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTACGGGTCAGT
259 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAA-TTTTTCGGGTCAGT
7479 TTTTTGCAAAAT
323 TTTTTGCAAAAT
* * * *
7491 TTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACT
1 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
* *
7556 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTATCTAAATAAATCTCT
66 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
7621 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
131 CAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
7658 CTAACCATCA
Statistics
Matches: 3496, Mismatches: 282, Indels: 114
0.90 0.07 0.03
Matches are distributed among these distances:
326 25 0.01
327 59 0.02
328 42 0.01
329 169 0.05
330 94 0.03
331 196 0.06
332 232 0.07
333 768 0.22
334 587 0.17
335 517 0.15
336 406 0.12
337 294 0.08
338 107 0.03
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (334 bp):
TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCT
CAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
AAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
TGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAATTTTTCGGGTCAGTTTT
TTGCAAAAT
Found at i:7800 original size:181 final size:181
Alignment explanation
Indices: 7494--7838 Score: 548
Period size: 181 Copynumber: 1.9 Consensus size: 181
7484 GCAAAATTTG
* * ** *
7494 AGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACTCAG
1 AGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGAGGCCCTGACTCAA
* * * *
7559 TTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTATCTAAATAAATCTCTCAG
66 TTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCTCAG
*
7624 CCACAATGCATTTACAGATTTATTTTTACGAGTACTAACCATCACGAGTTT
131 CCACAATGCATTTACAGAGTTATTTTTACGAGTACTAACCATCACGAGTTT
* *
7675 AGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGAGTCAA
1 AGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGAGGCCCTGACTCAA
*
7740 TTTTGAAAGATTTTTGGCGGAAAGACTTCTCGAAATATCTATATTCATCT-AATCAAATCTCTCA
66 TTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAAT-AAATCTCTCA
*
7804 GCCACAATGCATTTACGGAGTTATTTTTACGAGTA
130 GCCACAATGCATTTACAGAGTTATTTTTACGAGTA
7839 TATGAATCTT
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
180 3 0.02
181 146 0.98
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (181 bp):
AGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGAGGCCCTGACTCAA
TTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAATAAATCTCTCAG
CCACAATGCATTTACAGAGTTATTTTTACGAGTACTAACCATCACGAGTTT
Found at i:8144 original size:518 final size:518
Alignment explanation
Indices: 7154--8175 Score: 1654
Period size: 518 Copynumber: 2.0 Consensus size: 518
7144 CTTGCAAAAT
* ** *
7154 TTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTAAAAATGTGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCATGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * * *
7219 CAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAAACAAATCTCT
66 CAATTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
* * * *
7284 CATCCACAATGCATTTACATATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATATGAATCTTGTTTCGATTTAATTAGAA
*
7349 AAAAATTCAGAAAAAAATGGACAAACGATATTAGAAGCGTGAACAAACCTTAAAATATTTTTGGC
196 AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAACAAACCTTAAAATATTTTTGGC
*
7414 GTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTACGGGTCAGT
261 GTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAACTTTTACGGGTCAGT
* *
7479 TTTTTGCAAAATTTGAGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTT
326 TTTTTGCAAAATTTGAGCCGAAATCGTGTACTAACCATCACGGTTTTTAGCTAAAAATGCGTTTT
* * * **
7544 GAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTTATCT
391 GAGGCCCTGACTCAGTTTTGAATGATTTTTGGAAGAAAGACTTCTTGAAATAGCTATATCCATCT
7609 AAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTACTAACCATCACGAG
456 AAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTACTAACCATCACGAG
* *
7672 TTTAGCCGAAATCGTGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGAGT
1 TTTAGCCGAAATCATGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* *
7737 CAATTTTGAAAGATTTTTGGCGGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT
66 CAATTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
*
7802 CAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATATGAATCTTGTTTCGATTTAATTAGAA
131 CAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATATGAATCTTGTTTCGATTTAATTAGAA
* * * * *
7867 ATAATTTCAGATAAAATATGGAAAAACGATATTAGAAGTGTGAA-AAACCTTAAAATATTTTTTG
196 AAAAATTCAGA-AAAAAATGGAAAAACGATATTAGAAGCGTGAACAAACCTTAAAATATTTTTGG
* *
7931 CGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGTGGTAAAACTTTT-CGGGTCAG
260 CGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAACTTTTACGGGTCAG
* * *
7995 TTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTAAGCTAAAAATGTGTT
325 TTTTTTGCAAAATTTGAGCCGAAATCGTGTACTAACCATCACGGTTTTT-AGCTAAAAATGCGTT
*
8060 TTGGGGCCCTGACTCAGTTTTGAATGATTTTTGGAAGAAAGACTTCTTGAAATAGCTATATCCAT
389 TTGAGGCCCTGACTCAGTTTTGAATGATTTTTGGAAGAAAGACTTCTTGAAATAGCTATATCCAT
*
8125 CT-AATCAAATCTTTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
454 CTAAAT-AAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTA
8176 TCTGAATCTT
Statistics
Matches: 463, Mismatches: 38, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
517 57 0.12
518 377 0.81
519 29 0.06
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (518 bp):
TTTAGCCGAAATCATGTACAAACCATCACGGGGTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
CAATTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAACAAATCTCT
CAGCCACAATGCATTTACAGAGTTATTTTTACGAGTATATGAATCTTGTTTCGATTTAATTAGAA
AAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAACAAACCTTAAAATATTTTTGGC
GTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGAAAAACTTTTACGGGTCAGT
TTTTTGCAAAATTTGAGCCGAAATCGTGTACTAACCATCACGGTTTTTAGCTAAAAATGCGTTTT
GAGGCCCTGACTCAGTTTTGAATGATTTTTGGAAGAAAGACTTCTTGAAATAGCTATATCCATCT
AAATAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTACTAACCATCACGAG
Done.