Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022422.1 Corchorus olitorius cultivar O-4 contig22455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5510
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Found at i:653 original size:335 final size:334
Alignment explanation
Indices: 10--961 Score: 1452
Period size: 335 Copynumber: 2.9 Consensus size: 334
1 AAAATTCAT
* * * *
10 AAACGATAATAGAAGCATGAAAAACCCT-AAATA-TTTTGGCGTTGAATTATATTA-TTTTCTGA
1 AAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGA
* *
72 GTATTGTTGCAAAAAATTGGAGTAAAACTATTTCGGGTCAGTTTTTTGT-AAAATTTTAGCCGAA
66 GTATTG-TGGAAAAAATTGGAGTAAAACT-TTTCGGGTCAGTTTTTT-TCAAAATTTGAGCCGAA
* * * * *
136 ATCGTATACTAACCATCACGGTTTTTAAGCT-AAAATGTGTTTTGGGGCCCTGACTCAGTTTTGA
128 ATCTTGTACTAACCATCACGGTTTTT-GGCTAAAAATGCGTTTTGGGGCCCTGACTCAGTTTTGC
*
200 ATGGTTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATCAAATCTTTCAGCCACAA
192 ATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATCAAATCTTTCAGCCACAA
*
265 TGCATTTACGGAGTTATTTTTACTAGTATCTGAATCTTGTTTCGATTTAATTAGAAGTAAATTCA
257 TGCATTTACGGAGTTATTTTTACTAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCA
330 GAAAAAAATG-GA
322 GAAAAAAATGTGA
*
342 CAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCATTGAATTATATGATTTTTCTG
1 -AAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTG
*
407 AGTATTGTGGAAAAAATTGGAGTAAAACTTTTCGGGTCAGTTTTTTTACAAAATTTGAGCTGAAA
65 AGTATTGTGGAAAAAATTGGAGTAAAACTTTTCGGGTCAGTTTTTTT-CAAAATTTGAGCCGAAA
* ** *
472 TCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGAGGCCCTGACTCCCTTCTGCAT
129 TCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAGTTTTGCAT
*
537 GATTTTTGGCAGAAAGACTTCTCAAAATAGCTATATTCATCTAATCAAATCTTTCAGCCACAATG
194 GATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATCAAATCTTTCAGCCACAATG
*
602 CATTTACGGAGTTATTTTTACTTGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGA
259 CATTTACGGAGTTATTTTTACTAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGA
667 AAAAAATGTGA
324 AAAAAATGTGA
* * *
678 AAACGATATTAGAAGCGTGAAAAACCTTAAAGTATTTTTGGTGTTGAATTATATGATTTTTATGA
1 AAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGA
* * * * * *
743 GTATTGTGGCAAAAAATTGG-GGAAAATTTTTAGGGTCAGTTTTTTGCATAACTTGAGCCGAAAT
66 GTATTGTGG-AAAAAATTGGAGTAAAACTTTTCGGGTCAGTTTTTTTCAAAATTTGAGCCGAAAT
807 CTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAGTTTTGCATG
130 CTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAGTTTTGCATG
* * *
872 ATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAAAT-AAATCTCTCAGCCACAATG
195 ATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCT-AATCAAATCTTTCAGCCACAATG
* * *
936 CATTTACAGATTTATTTTTACGAGTA
259 CATTTACGGAGTTATTTTTACTAGTA
962 CTAACCATCA
Statistics
Matches: 566, Mismatches: 44, Indels: 17
0.90 0.07 0.03
Matches are distributed among these distances:
333 26 0.05
334 179 0.32
335 335 0.59
336 26 0.05
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36
Consensus pattern (334 bp):
AAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGA
GTATTGTGGAAAAAATTGGAGTAAAACTTTTCGGGTCAGTTTTTTTCAAAATTTGAGCCGAAATC
TTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAGTTTTGCATGA
TTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATCAAATCTTTCAGCCACAATGCA
TTTACGGAGTTATTTTTACTAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAA
AAAATGTGA
Found at i:1081 original size:181 final size:180
Alignment explanation
Indices: 798--1141 Score: 564
Period size: 181 Copynumber: 1.9 Consensus size: 180
788 GCATAACTTG
* * *
798 AGCCGAAATCTTGTACTAACCATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
1 AGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAA
* * * *
863 TTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAAAT-AAATCTCTCA
66 TTTTGAAAGATTTTTGGCAGAAAGAATTCTCGAAATATCTATATTCATCT-AATCAAATCTCTCA
*
927 GCCACAATGCATTTACAGATTTATTTTTACGAGTACTAACCATCACGAGTTT
130 GCCACAATGCATTTACAGAGTTA-TTTTACGAGTACTAACCATCACGAGTTT
979 AGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAA
1 AGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAA
* *
1044 TTTTTAAAGATTTTTGGCGGAAAGAATTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAG
66 TTTTGAAAGATTTTTGGCAGAAAGAATTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAG
*
1109 CCACAATGCATTTACGGAGTTATTTTACGAGTA
131 CCACAATGCATTTACAGAGTTATTTTACGAGTA
1142 TCTGAATCTT
Statistics
Matches: 151, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
180 14 0.09
181 137 0.91
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (180 bp):
AGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAA
TTTTGAAAGATTTTTGGCAGAAAGAATTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAG
CCACAATGCATTTACAGAGTTATTTTACGAGTACTAACCATCACGAGTTT
Found at i:2122 original size:334 final size:332
Alignment explanation
Indices: 976--4602 Score: 4881
Period size: 334 Copynumber: 11.0 Consensus size: 332
966 CCATCACGAG
*
976 TTTAGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTAC--A-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * * * *
1041 CAATTTTTAAAGATTTTTGGCGGAAAGAATTCTCGAAATATCTATATTCATCTAATC-AAATCTC
63 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-CAAAATCTC
* *
1105 TCAGCCACAATGCATTTACGGAGTTA-TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
127 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
* * *
1169 AATAAATTCAGAAAAAAAATGGGAAAACGATATTAGAAGCGTGAAAAACCTTTAAGTATTTTTGG
192 AATAAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
* * *
1234 TGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGT
256 CGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGT
1299 TTTTTGCAAAAT
321 TTTTTGCAAAAT
* * * * * * *
1311 TTGAGTCGATATCTTGTACTAACCATCACGATTTTTGGCTAAAAATGCGTTTTGAGGCCTTGACT
1 TTTAGCCGAAATCGTGTAC--A-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * * *
1376 CACTTTTGAATGATTTTTGGCCGAAAGACATCTTGAAATATCTATATTCATCTAA-ATAAATCTC
63 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACA-AAATCTC
*
1440 TCTGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGA--T--TT---
127 TCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGA
1498 AAT--A---AG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
192 AATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
* * * *
1557 GTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAAATTGAGTTAAAACTTTTCAGATCAGT
257 GTTGAATTATATGATTTTTCTGAATATTGTGGC-AAAAAATTGGGGTAAAACTTTTCGGGTCAGT
*
1622 TCTTTGCAAAAT
321 TTTTTGCAAAAT
* *
1634 TTTAGCCGAAATCGTATAC-CATCACGGTTTTTGTCTAAAAATGCGTTTTGGGGCCCTGACTCAG
1 TTTAGCCGAAATCGTGTACACATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
* *
1698 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATAGTCATCTAATAAAATCTCTCAG
66 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACAAAATCTCTCAG
* * ** *
1763 CCACAATGCATTTAC-GGTGTTATTTTTACGAGTATCTGAATCTTGTTACGATTTGGTTATAAAT
131 CCACAATGCATTTACAGAT-TTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAAT
* *
1827 AAATTCAGAAAAAAAAAATGGAAAAACGATATTAGAACCGTAAAAAACCTTAAAATATTTTTGGC
195 AAATTCAG---AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGC
* * * * *
1892 GTAGAATTATATGATTTTTCTGAGTATTGTGGC-AAAAA-TGGGGAAAAAATTTTCGGGTCGGTT
257 GTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGTT
1955 TTTTGCAAAAT
322 TTTTGCAAAAT
* * * * *
1966 TTTAGTCGAAATCGTGTACATTATCACGGTTTTTGGCTAAAAATGCGTTTCGAGGCCCTGATTCA
1 TTTAGCCGAAATCGTGTACA-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCA
* * *
2031 GTTTTGCATGATTTTTGGCAGAAAGACTTCTGGAAATATCTATATTCATCTAACAAAATTTCTCA
65 GTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACAAAATCTCTCA
* * ** *
2096 GCCACAATGCATTTAAAGATTTATTTTTACCAGTATCTGTTTCTTGTTTCGATTTAATTAAAAAT
130 GCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAAT
** * * * *
2161 AAATTCAGAAAAAAATTCATAAACGATAATAGAAGCATGAAAAACCCTAAAATATTTTTGGCGTT
195 AAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTT
* * * * *
2226 GAATTATATTATTTTTCTGAGTATTGTTGCAAAAAATTGGGG-AAAACCTTTTTGAGTCAGTTTT
260 GAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAA-CTTTTCGGGTCAG-TTT
2290 TTTGCAAAAT
323 TTTGCAAAAT
* * * * *
2300 TTTAGCAGAAATCCTGTACACCATCACGGTTTTTTGCTAAAAATGCGTTTCGAGGCCCTGACTCA
1 TTTAGCCGAAATCGTGTACA-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCA
* *
2365 GTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-ATAATTCTCTC
65 GTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACA-AAATCTCTC
* * *
2429 AGCCAGAATGCATTTACAGATTTATTTTTACGAGTATTTAAATCTTGTTTCGATTTAATTAGCAA
129 AGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG-AA
* * *
2494 A-AAATTCAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATATTTGGTG
193 ATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCG
* * *
2558 TTCAGTTATATGATTTTTCTGAATATTGTGGC-AAAAATTGGGGTAAAACTTTTCGGGTCACTTT
258 TTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGTTT
*
2622 TTTACAAAAT
323 TTTGCAAAAT
* *
2632 TTAAGCCGAAATCGTGTACTAACCATCACGGGTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGTAC--A-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * *
2697 CAATTTTGAAAGATTTTTGGCAGAAAGACTTCTCGAAATATCTTTATTCATCTAATC-AAATCTC
63 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-CAAAATCTC
* *
2761 -CTAGCCACAATGCATTTACGGAGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
127 TC-AGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
* * *
2825 AAATAATTTCAGAAAAAATATGGAAAAACGATATTAGAAGTGTGAAAAACCTTAAAATATTTTTT
191 AAATAAATTCAGAAAAAA-ATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTG
2890 GCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAG
255 GCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAG
*
2955 TTTTTTGTAAAAT
320 TTTTTTGCAAAAT
* * * *
2968 TTTAGACGAAATCGTGTACTAACCATCACGGTTTTTAAGCTAAAAATGCGTTTGGGGGCCCTGAT
1 TTTAGCCGAAATCGTGTAC--A-CATCACGGTTTTT-GGCTAAAAATGCGTTTTGGGGCCCTGAC
*
3033 TCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCTAATC-AAATCT
62 TCAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-CAAAATCT
* * *
3097 TTCAGCCACAATGCATTTACAGAGTTATGTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
126 CTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
3162 AAATAAATTCAGAAAAAAAATGTG-AAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTT
191 AAATAAATTCAG-AAAAAAATG-GAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTT
* * * ** * *
3226 GGTGTTGAATTAAATGATTTTTCTGAGTATTG-GGCAAAAAATTAAGG-AAAATTTTTCGAGTCA
254 GGCGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCA
3289 G-TTTTTGCAAAAT
319 GTTTTTTGCAAAAT
* * * * * * *
3302 TTGAACCGAAATCTTGTACTCATCACGGTTTTTAGCTAAAATTGCGTTTTGGGGCCTTGACTCAG
1 TTTAGCCGAAATCGTGTACACATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
* *
3367 TTTTGCATGATTTTTGGCAGAAAGACTTCTTGAAATATCTATATTCATCTAA-ATAAATCTCTCA
66 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACA-AAATCTCTCA
3431 GCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCG-----ATT-----T
130 GCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAAT
3486 -AATT-AG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTT
195 AAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTT
* *
3548 GAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGAGTTAAAACTTTTCGGGTCAGTTTTT
260 GAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGTTTTT
3613 TGCAAAAT
325 TGCAAAAT
* * *
3621 TTTAGCCAAAATCGTGTAC-CATTACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCTTGACTCAG
1 TTTAGCCGAAATCGTGTACACATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
*
3685 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATAGTCATCTAATC-AAATCTCTCA
66 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-CAAAATCTCTCA
*
3749 GCCACAATGCATTTAC-GGTGTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAA
130 GCCACAATGCATTTACAGAT-TTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * *
3813 TAAATTCAGAAAAAAATGGGAAAACGATATTAGAAGCGTGAAAAACCTTTAAGTATTTTTGGTGT
194 TAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGT
* * * * * *
3878 TGAATTATATGATTTTCCTGAGTATTGTGGCAAGACATTGGGGATAATA-TTTTCGGGTCAGATT
259 TGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGG-TAAAACTTTTCGGGTCAGTTT
3942 TTTGCAAAAT
323 TTTGCAAAAT
* * *
3952 TTGAGCCGAAATCTTGTAATAACCATCACGG-TTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
1 TTTAGCCGAAATCGTGT-A-CA-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACT
* * **
4016 CAGTTTTGCATGATTTTTTGCAGAAAGACTTCTTAAAATATCTATATTCATCTAA-ATCAAATCT
63 CAGTTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACA--AAATCT
* *
4080 CTCAACCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCATGTTTCGATTTAATTAG
126 CTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
*
4145 AAA-AAATGCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
191 AAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGG
*
4208 CGCTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGT
256 CGTTGAATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGT
4273 TTTTTGCAAAAT
321 TTTTTGCAAAAT
4285 TTTAGCCG-AA------AC-CATCACGGTTTTTGGCTAAAAATGCGTTTTGGGG-CCTGACTCAG
1 TTTAGCCGAAATCGTGTACACATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
* *
4341 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATAGCTATATTCATCGAATC-AAATCTCTCA
66 TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAA-CAAAATCTCTCA
* * * * * *
4405 GCCACAATGCATTTACGGAGTTACTTTTACGAGTATCTAAATTTTGTTTCAATTTAATTAGAAAT
130 GCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAAT
* *
4470 AAATTCAG--GAAAA---AAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTTGCGTT
195 AAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTT
* * * *
4530 GAATTATATGTTTTTTCTGAGTATTGTGGC-AAAAATATGGGGAAAAATTTTTCGGGTCAGTTTT
260 GAATTATATGATTTTTCTGAATATTGTGGCAAAAAAT-TGGGGTAAAACTTTTCGGGTCAGTTTT
*
4594 TTACAAAAT
324 TTGCAAAAT
4603 ACCTCCAAAT
Statistics
Matches: 2933, Mismatches: 278, Indels: 179
0.87 0.08 0.05
Matches are distributed among these distances:
315 1 0.00
316 77 0.03
317 21 0.01
318 273 0.09
319 175 0.06
320 2 0.00
321 71 0.02
322 152 0.05
323 81 0.03
324 2 0.00
325 4 0.00
326 3 0.00
327 1 0.00
328 2 0.00
329 7 0.00
330 137 0.05
331 217 0.07
332 95 0.03
333 165 0.06
334 711 0.24
335 387 0.13
336 115 0.04
337 226 0.08
338 8 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (332 bp):
TTTAGCCGAAATCGTGTACACATCACGGTTTTTGGCTAAAAATGCGTTTTGGGGCCCTGACTCAG
TTTTGAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAACAAAATCTCTCAG
CCACAATGCATTTACAGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATA
AATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTAAAATATTTTTGGCGTTG
AATTATATGATTTTTCTGAATATTGTGGCAAAAAATTGGGGTAAAACTTTTCGGGTCAGTTTTTT
GCAAAAT
Done.