Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022424.1 Corchorus olitorius cultivar O-4 contig22457, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59421

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3916--4020
42
2.5
42
98
1
203
17
9
15
58
1.63
3950--4017
21
3.2
21
67
8
66
17
10
16
55
1.67
8410--8443
15
2.3
15
89
0
50
58
8
29
2
1.43
9005--9042
20
1.9
20
88
0
58
34
23
15
26
1.95
11475--11565
37
2.5
37
83
0
119
27
28
23
20
1.99
13242--13299
19
2.9
19
80
9
71
39
12
17
31
1.86
13242--13300
21
2.9
20
85
9
75
38
11
16
32
1.86
27250--27283
17
2.0
17
100
0
68
35
23
23
17
1.95
35555--35594
16
2.5
15
88
8
53
47
20
15
17
1.83
41350--41392
21
2.0
21
100
0
86
34
13
18
32
1.90
49719--49752
16
2.1
16
100
0
68
29
8
23
38
1.85
50740--50780
21
1.9
22
85
14
59
36
9
4
48
1.58
55651--55708
19
2.9
19
87
5
80
29
22
12
36
1.90

Tables:   1

The End!