Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022431.1 Corchorus olitorius cultivar O-4 contig22464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43175

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1175--1227
28
1.9
28
85
11
74
45
9
18
26
1.80
1175--1242
28
2.4
26
81
16
73
42
10
20
26
1.84
1175--1251
31
2.6
27
80
15
75
42
10
22
24
1.84
1820--2012
64
3.0
64
98
0
368
36
14
9
39
1.78
24932--25221
151
1.9
151
86
1
411
34
20
11
34
1.89
32559--32599
11
3.6
11
80
6
55
2
58
0
39
1.11
32556--32605
23
2.1
24
96
3
93
6
50
0
44
1.26
35089--35146
19
2.9
19
80
9
71
37
10
20
31
1.86
35823--35925
31
3.4
30
73
15
86
38
2
21
36
1.68
36205--36364
60
2.7
60
81
3
162
41
13
16
28
1.87
36410--36539
60
2.2
60
79
8
140
33
16
13
36
1.88
37588--37617
2
15.0
2
100
0
60
50
0
0
50
1.00
41681--41811
67
2.0
67
93
3
228
35
12
9
42
1.75

Tables:   1

The End!