Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022432.1 Corchorus olitorius cultivar O-4 contig22465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111819

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13736--13761
2
13.0
2
100
0
52
50
0
0
50
1.00
15096--15175
40
2.0
40
95
0
142
45
11
5
38
1.62
19321--19379
5
11.8
5
98
0
109
40
1
0
57
1.09
19688--20532
438
1.9
430
87
3
1219
31
15
13
39
1.86
22248--22277
2
15.0
2
92
0
51
53
0
0
46
1.00
22654--22709
25
2.2
26
90
3
87
37
5
10
46
1.62
24815--24857
23
1.9
22
90
4
68
39
2
4
53
1.34
27251--27289
2
19.5
2
100
0
78
48
0
0
51
1.00
27428--27461
17
2.0
17
94
0
59
38
5
8
47
1.59
41561--41588
3
9.3
3
100
0
56
67
0
32
0
0.91
43661--43754
41
2.3
41
98
0
179
27
21
19
31
1.97
54864--54968
43
2.5
43
84
1
122
26
21
28
22
1.99
54907--55004
45
2.2
44
89
7
146
23
21
28
26
1.99
61316--61354
2
19.5
2
94
0
69
0
0
46
53
1.00
68905--69194
144
2.0
141
95
2
526
36
14
17
30
1.90
71861--72047
102
1.8
102
89
6
297
39
16
13
30
1.87
106484--106530
24
2.0
24
84
12
62
34
2
2
61
1.20
107275--107301
11
2.5
11
100
0
54
92
0
7
0
0.38
111173--111198
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!