Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022433.1 Corchorus olitorius cultivar O-4 contig22466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21331
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33


Found at i:8072 original size:4 final size:4

Alignment explanation


    Indices: 8063--8105  Score: 86
    Period size: 4  Copynumber: 10.8  Consensus size: 4

       8053 GATTTTAATT

                                                                 
       8063 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
          1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA

       8106 ACAATATATA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26


Consensus pattern (4 bp):   
ATAG

Done.