Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022435.1 Corchorus olitorius cultivar O-4 contig22468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39842

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
125--2076
332
5.9
328
77
8
1814
33
14
15
37
1.87
8596--9328
363
2.0
363
99
0
1448
32
13
22
31
1.92
10094--12044
333
5.9
328
76
10
1621
33
14
15
36
1.89
11146--12904
971
1.8
971
83
4
2380
33
14
15
36
1.88
14361--14411
26
2.0
26
84
7
68
27
5
13
52
1.63
15202--15231
2
15.0
2
100
0
60
50
0
0
50
1.00
16477--16501
12
2.1
12
100
0
50
52
8
8
32
1.60
17164--17196
16
2.1
16
94
5
59
6
24
12
57
1.57
22200--22276
29
2.6
31
79
10
97
23
12
25
37
1.91
31842--31879
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!