Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022436.1 Corchorus olitorius cultivar O-4 contig22469, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40579

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8007--8037
3
10.3
3
92
0
53
32
3
64
0
1.09
8132--8174
18
2.4
18
84
3
61
13
13
16
55
1.69
17800--17883
31
2.8
30
80
7
82
15
20
26
38
1.92
17831--17914
31
2.7
31
84
0
105
14
20
26
39
1.90
21273--21355
22
3.8
21
73
17
64
57
1
2
38
1.19
21275--21323
25
2.0
25
84
8
64
59
0
0
40
0.98
22982--23015
1
34.0
1
100
0
68
0
0
0
100
0.00
26055--26139
42
2.0
42
100
0
170
25
21
16
36
1.94
26173--26460
99
3.0
97
84
6
334
27
14
19
38
1.91
29960--30225
98
2.7
96
85
2
345
26
15
21
37
1.92
30457--30499
2
22.5
2
81
9
54
48
2
2
46
1.27
31329--31369
21
2.0
21
86
9
59
53
31
14
0
1.41
31731--31908
96
1.9
96
84
2
241
28
17
22
32
1.96
35985--37650
330
5.0
328
79
6
1722
37
15
14
32
1.89
35997--37654
663
2.5
660
86
3
2239
36
15
14
32
1.89
37576--37735
80
2.0
79
98
1
311
28
22
21
28
1.99
37850--38091
123
2.0
121
86
3
342
40
14
14
31
1.85
38847--39632
332
2.4
332
92
1
1299
34
15
17
32
1.91
39628--39704
40
1.9
40
94
0
136
37
19
9
33
1.83

Tables:   1

The End!