Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022437.1 Corchorus olitorius cultivar O-4 contig22470, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50356

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103--3191
334
9.3
333
81
6
2719
35
16
15
32
1.90
1752--3188
659
2.2
653
81
6
1580
37
15
13
33
1.87
3551--3580
15
1.9
16
93
6
53
53
3
0
43
1.17
3791--3923
8
16.2
8
72
20
66
54
0
21
24
1.45
3794--3928
5
30.4
5
72
23
115
54
0
20
24
1.44
3794--3929
13
9.6
13
79
16
121
54
0
21
24
1.45
3982--4037
28
2.0
28
100
0
112
32
10
14
42
1.80
15084--15123
21
1.9
21
94
0
71
40
15
15
30
1.87
18547--18625
34
2.3
34
100
0
158
30
10
5
54
1.55
22244--22285
19
2.4
17
80
11
57
16
4
26
52
1.63
23734--23774
13
3.2
13
100
0
82
31
7
7
53
1.56
24467--24497
5
6.0
5
96
3
53
19
0
3
77
0.90
41134--41171
20
1.9
20
100
0
76
47
0
15
36
1.46
44892--44934
18
2.4
18
80
0
50
44
0
0
55
0.99
47196--47221
2
13.0
2
100
0
52
50
0
0
50
1.00
47424--47494
34
2.1
34
97
0
133
36
14
9
39
1.79
48451--48491
2
20.5
2
100
0
82
51
0
0
48
1.00
50329--50355
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!