Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022438.1 Corchorus olitorius cultivar O-4 contig22471, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55488

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--184
21
2.1
21
86
0
61
45
4
18
31
1.69
1645--1694
8
5.9
8
77
13
55
54
0
4
42
1.19
5238--5287
16
3.1
16
72
11
57
40
0
12
48
1.40
6636--6682
6
7.7
6
80
4
58
74
23
2
0
0.93
11959--12024
29
2.2
30
78
7
73
25
12
12
50
1.74
15069--15136
25
2.6
26
81
11
86
54
14
4
26
1.59
18433--18475
22
2.0
22
95
0
77
30
44
11
13
1.80
20253--20290
19
2.0
19
89
0
58
36
31
7
23
1.84
22282--22351
29
2.3
30
80
7
79
32
25
11
30
1.91
22313--22397
31
2.8
30
74
22
79
31
20
10
37
1.86
22616--22720
31
3.5
31
76
10
110
31
14
26
27
1.95
24804--24828
12
2.1
12
100
0
50
32
8
24
36
1.84
25475--25512
20
1.9
20
88
0
58
23
7
13
55
1.64
25811--25854
22
2.0
21
87
12
63
15
11
40
31
1.83
41077--41338
107
2.5
105
88
2
366
41
8
9
40
1.68
42793--42886
45
2.2
43
83
7
111
37
21
5
36
1.76
43672--43950
137
2.0
138
95
0
497
40
16
18
24
1.90
43987--44043
22
2.5
23
97
2
107
50
3
17
28
1.62
49192--49217
11
2.4
11
100
0
52
65
0
23
11
1.25

Tables:   1

The End!