Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022439.1 Corchorus olitorius cultivar O-4 contig22472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12997
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31


Found at i:11327 original size:36 final size:36

Alignment explanation


    Indices: 11280--11354  Score: 141
    Period size: 36  Copynumber: 2.1  Consensus size: 36

      11270 CCTGTTATGG

                            *                   
      11280 AATTTGAAGTTTGTGTTTATGTTTATATTTAGGAGT
          1 AATTTGAAGTTTGTGTCTATGTTTATATTTAGGAGT

                                                
      11316 AATTTGAAGTTTGTGTCTATGTTTATATTTAGGAGT
          1 AATTTGAAGTTTGTGTCTATGTTTATATTTAGGAGT

               
      11352 AAT
          1 AAT

      11355 GACAGACTAA


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.27, C:0.01, G:0.21, T:0.51


Consensus pattern (36 bp):   
AATTTGAAGTTTGTGTCTATGTTTATATTTAGGAGT
Done.