Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022440.1 Corchorus olitorius cultivar O-4 contig22473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148018

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
394--450
25
2.4
24
85
5
71
33
5
1
59
1.30
4998--5045
22
2.1
23
84
3
62
58
0
37
4
1.18
5891--6019
46
3.1
43
69
25
114
40
5
18
35
1.74
8625--8655
13
2.4
13
94
0
53
54
3
0
41
1.16
8624--8683
15
4.1
14
77
14
59
50
1
3
45
1.28
10472--10564
47
2.0
46
89
2
141
18
7
19
54
1.66
11895--11925
11
2.8
11
100
0
62
77
16
6
0
0.97
11895--11944
6
8.2
6
81
14
50
74
16
10
0
1.08
13945--13990
13
3.3
13
82
11
56
17
10
28
43
1.82
33994--34068
31
2.4
31
84
0
105
20
24
24
32
1.98
35268--35296
12
2.4
12
100
0
58
13
20
0
65
1.26
36435--36459
12
2.1
12
100
0
50
60
0
16
24
1.36
37500--37573
31
2.4
31
90
0
112
41
13
17
27
1.87
37709--37805
29
3.3
29
71
16
90
31
18
15
34
1.92
37680--37836
60
2.6
60
92
1
253
29
16
17
36
1.92
37737--37840
31
3.5
30
72
17
108
29
19
15
35
1.92
39863--39903
21
2.0
20
85
4
55
29
48
14
7
1.71
40152--40410
130
2.0
130
100
0
518
27
13
27
32
1.94
40970--41003
2
17.0
2
87
0
50
50
0
2
47
1.16
41171--41209
19
2.0
20
95
5
71
20
12
20
46
1.83
51624--51769
79
1.8
79
86
5
215
50
21
6
21
1.70
58538--58660
58
2.2
55
80
8
147
27
19
18
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64999--65038
13
3.0
13
82
7
53
82
0
17
0
0.67
80098--80134
18
2.1
18
89
0
56
70
5
13
10
1.32
80380--80410
13
2.5
12
94
5
53
16
3
0
80
0.83
80380--80410
6
5.0
6
92
7
53
16
3
0
80
0.83
85678--85713
3
12.0
3
100
0
72
66
0
0
33
0.92
111005--111037
17
1.9
17
100
0
66
72
0
27
0
0.85
114179--114298
64
1.9
63
91
1
195
57
11
14
16
1.65
118912--118987
40
1.9
40
94
2
136
38
13
14
34
1.85
130450--130520
25
2.6
28
82
17
103
25
28
14
32
1.94
135240--135273
2
17.0
2
100
0
68
50
0
0
50
1.00
136937--137003
17
3.8
17
81
11
71
22
20
22
34
1.97
136950--137013
20
3.3
20
89
6
89
21
17
28
32
1.96
136966--137016
20
2.5
20
96
0
93
23
17
25
33
1.96
141831--141869
18
2.2
18
100
0
78
53
5
0
41
1.23

Tables:   1

The End!