Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022441.1 Corchorus olitorius cultivar O-4 contig22474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13061

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7191--7431
121
2.0
122
85
2
333
14
20
22
42
1.88
7495--7828
20
16.5
20
72
5
251
36
7
26
29
1.83
7496--7828
40
8.2
40
94
1
513
36
6
26
29
1.82
9080--9104
10
2.5
10
100
0
50
80
0
20
0
0.72
10219--10248
2
15.0
2
100
0
60
50
0
0
50
1.00
10239--11080
332
2.5
332
83
3
1102
34
14
14
36
1.87
10290--11831
794
1.9
793
88
3
2312
34
14
15
36
1.87
10955--11206
129
2.0
129
89
4
393
37
9
13
39
1.77
11084--12385
333
3.9
332
83
5
1695
32
14
16
36
1.89
12288--12480
94
2.0
95
92
1
325
23
20
20
35
1.96
12383--13061
330
2.1
332
95
0
1218
30
16
16
36
1.91

Tables:   1

The End!