genome.fa.s22442.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022442.1 Corchorus olitorius cultivar O-4 contig22475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112913

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2379--2507	67	1.9	67	92	3	215	41	24	26	8	1.83
2446--2829	59	7.3	49	79	17	391	36	26	29	7	1.84
2369--2829	108	4.2	110	83	14	557	37	25	29	7	1.83
2552--2709	45	3.4	45	88	8	235	35	25	31	6	1.83
2462--2768	153	2.0	153	97	0	578	35	26	30	7	1.83
4104--4179	4	19.0	4	100	0	152	50	25	25	0	1.50
5348--5420	31	2.4	31	90	0	110	27	19	27	26	1.99
6982--7035	27	2.0	27	92	0	90	33	29	9	27	1.88
8039--8110	29	2.4	30	83	4	92	26	29	15	29	1.96
8408--8484	29	2.5	30	87	6	102	33	10	24	31	1.89
8826--8861	18	2.0	18	100	0	72	33	11	22	33	1.89
19401--19468	33	2.2	31	84	7	84	51	10	5	32	1.60
20997--21118	38	3.0	38	73	20	129	46	18	4	30	1.68
21767--21793	2	13.5	2	100	0	54	51	0	0	48	1.00
22543--22674	67	2.0	67	100	0	264	36	17	13	32	1.89
23101--23191	36	2.5	36	94	0	155	35	26	13	25	1.92
31410--31554	72	2.0	72	100	0	290	44	17	11	26	1.83
32743--32781	19	1.9	20	85	15	53	46	5	20	28	1.72
38441--38471	4	7.8	4	100	0	62	77	22	0	0	0.77
43600--43632	1	33.0	1	100	0	66	100	0	0	0	0.00
45523--45577	15	3.8	15	78	9	69	63	3	0	32	1.12
45523--45580	28	2.1	28	100	0	116	65	3	0	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51831--51978	36	3.9	36	81	14	188	27	24	25	22	2.00
51812--51974	81	2.0	81	97	0	308	28	23	25	22	2.00
63942--63968	6	4.5	6	100	0	54	51	14	0	33	1.43
64572--64606	11	3.2	11	83	0	52	77	17	5	0	0.96
67426--67501	38	2.0	38	100	0	152	21	7	26	44	1.79
70457--70564	54	2.0	54	92	0	180	40	14	13	30	1.85
72339--72383	23	2.0	23	86	8	65	37	2	4	55	1.32
72681--72718	2	19.0	2	100	0	76	50	0	0	50	1.00
75851--75875	2	12.5	2	100	0	50	52	0	0	48	1.00
84277--84314	13	3.0	13	84	3	51	73	0	13	13	1.09
85470--85495	2	13.0	2	100	0	52	50	0	0	50	1.00
89944--90236	93	3.2	93	89	1	419	35	19	25	19	1.96
98564--98603	2	20.0	2	100	0	80	50	0	0	50	1.00
105885--105940	27	2.1	27	100	0	112	32	10	3	53	1.53
106003--106041	18	2.2	18	95	0	69	23	7	5	64	1.40
105945--106183	129	1.9	129	95	0	433	28	14	7	49	1.70
106132--106170	18	2.2	18	100	0	78	23	10	5	61	1.48
106292--106356	33	2.0	33	93	0	112	38	15	27	18	1.91
106797--106844	23	2.1	23	100	0	96	27	12	22	37	1.90
108229--112913	333	14.1	333	86	3	5832	36	16	15	31	1.90

Tables:   1

The End!