Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022446.1 Corchorus olitorius cultivar O-4 contig22479, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35757

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2040--2087
4
12.0
4
100
0
96
0
50
0
50
1.00
5812--5878
12
5.1
12
71
18
53
64
20
0
14
1.29
5793--5879
41
2.1
41
97
2
167
60
20
0
18
1.36
6607--6651
19
2.3
20
81
11
58
73
2
6
17
1.15
15426--15472
19
2.5
19
89
3
69
19
19
27
34
1.96
21632--21745
56
2.0
56
100
0
228
28
34
15
21
1.94
24769--24798
15
1.9
16
93
6
53
43
0
3
53
1.17
25145--27333
337
6.7
329
75
12
1793
33
13
14
37
1.86
25155--27334
971
2.2
963
78
10
2233
33
13
14
37
1.86
30373--30481
54
2.0
54
100
0
218
33
12
29
23
1.92
33471--33604
67
2.0
66
94
1
232
41
2
11
44
1.55
35342--35416
29
2.5
30
86
4
98
32
18
10
38
1.85
35547--35643
31
3.1
31
93
1
158
41
11
14
32
1.81

Tables:   1

The End!