Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022447.1 Corchorus olitorius cultivar O-4 contig22480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47375
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Found at i:820 original size:30 final size:31
Alignment explanation
Indices: 715--810 Score: 149
Period size: 31 Copynumber: 3.1 Consensus size: 31
705 ACTAAAGACT
* *
715 AAAAAAATTCTCTTATATTTTTCTTTTGGGAC
1 AAAAAAA-TCCCTTATGTTTTTCTTTTGGGAC
*
747 AAAAAAATCCCTTATGTTTTTCTTTTGAGAC
1 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC
778 AAAAAAATCCCTTATG-TTTTCTTTTGGGAC
1 AAAAAAATCCCTTATGTTTTTCTTTTGGGAC
808 AAA
1 AAA
811 TCAGTCCCTT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
30 16 0.27
31 37 0.62
32 7 0.12
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (31 bp):
AAAAAAATCCCTTATGTTTTTCTTTTGGGAC
Found at i:982 original size:29 final size:30
Alignment explanation
Indices: 934--1013 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 30
924 CTCATTTTTG
* * *
934 AAACGTAAGGGATTAATTTGTCCCGAAA-A
1 AAACATAAGGGATTATTTTGTCCCAAAACA
* *
963 AAATATAAGGGATTATTTTGTCTCAAAAGCA
1 AAACATAAGGGATTATTTTGTCCCAAAA-CA
*
994 AAACATAAGGGATTTTTTTG
1 AAACATAAGGGATTATTTTG
1014 GGTATTTAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 23 0.55
31 19 0.45
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (30 bp):
AAACATAAGGGATTATTTTGTCCCAAAACA
Found at i:1523 original size:21 final size:19
Alignment explanation
Indices: 1498--1555 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
1488 GCTGCTCTAA
1498 TAATCTCATCTATACAGTACC
1 TAATCTCATCTATACAGT--C
* * *
1519 TAATCTAATCTGTACAGTG
1 TAATCTCATCTATACAGTC
*
1538 TAATCTCATCGATACAGT
1 TAATCTCATCTATACAGT
1556 TGTCAAACAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (19 bp):
TAATCTCATCTATACAGTC
Found at i:1553 original size:19 final size:20
Alignment explanation
Indices: 1498--1555 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 20
1488 GCTGCTCTAA
*
1498 TAATCTCATCTATACAGTACC
1 TAATCTCATCGATACAGTA-C
* *
1519 TAATCTAATCTG-TACAGT-G
1 TAATCTCATC-GATACAGTAC
1538 TAATCTCATCGATACAGT
1 TAATCTCATCGATACAGT
1556 TGTCAAACAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
21 15 0.48
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
TAATCTCATCGATACAGTAC
Found at i:5461 original size:20 final size:20
Alignment explanation
Indices: 5424--5462 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
5414 AGAGAGAAGA
5424 ACTTTCTATATCTTCTTCTC
1 ACTTTCTATATCTTCTTCTC
*
5444 ACTTT-TATGTCTTGCTTCT
1 ACTTTCTATATCTT-CTTCT
5463 TTCTCTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.13, C:0.26, G:0.05, T:0.56
Consensus pattern (20 bp):
ACTTTCTATATCTTCTTCTC
Found at i:8447 original size:29 final size:30
Alignment explanation
Indices: 8376--8447 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
8366 CGTCTCAGAT
*
8376 GGTGCAAAATGTATGCAAAATAAAACATTAG
1 GGTGCAAAATG-ATGCAAAATAAAAAATTAG
* * *
8407 GGTGCGATATGAT-CAAATTAAAAAAGTT-G
1 GGTGCAAAATGATGCAAAATAAAAAA-TTAG
8436 GGTGCAAAATGA
1 GGTGCAAAATGA
8448 CAATTCGTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
29 21 0.62
30 4 0.12
31 9 0.26
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (30 bp):
GGTGCAAAATGATGCAAAATAAAAAATTAG
Found at i:19982 original size:17 final size:16
Alignment explanation
Indices: 19942--19992 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
19932 CATGTAATCT
*
19942 TTGATCACCGGTGATC
1 TTGATCACTGGTGATC
19958 TTGCATCACTGGTGATC
1 TTG-ATCACTGGTGATC
*
19975 TTAGATCACTAGTGATC
1 TT-GATCACTGGTGATC
19992 T
1 T
19993 GGGGGGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 3 0.10
17 27 0.87
18 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (16 bp):
TTGATCACTGGTGATC
Found at i:22141 original size:25 final size:24
Alignment explanation
Indices: 22112--22168 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
22102 ATGGATTGTA
*
22112 AAATAAATTGAATAATTAAGACATT
1 AAATAAATTGAAGAATTAA-ACATT
*
22137 AAATAAATTTAAGAATTAAACATT
1 AAATAAATTGAAGAATTAAACATT
22161 AAA-AAATT
1 AAATAAATT
22169 CAAGGCTGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 5 0.17
24 8 0.27
25 17 0.57
ACGTcount: A:0.60, C:0.04, G:0.05, T:0.32
Consensus pattern (24 bp):
AAATAAATTGAAGAATTAAACATT
Found at i:23285 original size:28 final size:28
Alignment explanation
Indices: 23248--23320 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
23238 TAGATATGTT
* *
23248 GGGTGGGATGCGATTTGATAATAATTTG
1 GGGTGAGATGAGATTTGATAATAATTTG
*
23276 GGGTGAGATGAGATTTGATAATGATTTG
1 GGGTGAGATGAGATTTGATAATAATTTG
*
23304 GGGTGAGATGTGATTTG
1 GGGTGAGATGAGATTTG
23321 TGCGTAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (28 bp):
GGGTGAGATGAGATTTGATAATAATTTG
Found at i:28030 original size:23 final size:20
Alignment explanation
Indices: 27991--28031 Score: 55
Period size: 23 Copynumber: 1.9 Consensus size: 20
27981 CAAAGATGAT
27991 CATTTTTTTTATGCCTTTGC
1 CATTTTTTTTATGCCTTTGC
28011 CATTTTCTGTTTATTGCCTTT
1 CATTTT-T-TTTA-TGCCTTT
28032 ATCTATGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 1 0.06
22 4 0.22
23 7 0.39
ACGTcount: A:0.10, C:0.20, G:0.10, T:0.61
Consensus pattern (20 bp):
CATTTTTTTTATGCCTTTGC
Found at i:36765 original size:23 final size:24
Alignment explanation
Indices: 36737--36785 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
36727 CTATCTCTCT
36737 GAAAATATTC-ACAAGGAAAACAG
1 GAAAATATTCAACAAGGAAAACAG
*
36760 GAAAATATTCAACAAGTAAAACAG
1 GAAAATATTCAACAAGGAAAACAG
36784 GA
1 GA
36786 GACAGAGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.57, C:0.12, G:0.16, T:0.14
Consensus pattern (24 bp):
GAAAATATTCAACAAGGAAAACAG
Found at i:37049 original size:151 final size:143
Alignment explanation
Indices: 36779--37050 Score: 418
Period size: 151 Copynumber: 1.8 Consensus size: 143
36769 CAACAAGTAA
*
36779 AACAGGAGACAGAGTAAGTATTATATGTGTTTAAGGGGAGATCTCATCTGAATAAAAAATACAAA
1 AACAGGAGACAGAGTAAGTATCATATGTGTTTAAGGGGAGATCTCATCTGAATAAAAAATACAAA
* *
36844 CTAGATAAAGACTACATTCAGTGTGATGAATCATGGCATCATTCCATCTTCTTATCTGAGTAGGT
66 CTACATAAAAACTACATTCAGTGTGATGAATCATGGCATCATTCCATCTTCTTATCTGAGTAGGT
36909 AAGATGAGTAAGT
131 AAGATGAGTAAGT
36922 AACAGGAGACAAGAGTAAGTATCATATGTGTTTAAGGGGAGATCTCATCTGAATAAAAACTACAA
1 AACAGGAGAC-AGAGTAAGTATCATATGTGTTTAAGGGGAGATCTCATCTGAAT---AA--A-AA
* * *
36987 ACTACAAACTTCATAAAAACTACATTCAGTGTGATGAATCATGTCATCATTTCATCTTCTTATC
59 A-TACAAACTACATAAAAACTACATTCAGTGTGATGAATCATGGCATCATTCCATCTTCTTATC
37051 CGGAGAGGCT
Statistics
Matches: 115, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
143 10 0.09
144 42 0.37
147 2 0.02
149 1 0.01
150 3 0.03
151 57 0.50
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (143 bp):
AACAGGAGACAGAGTAAGTATCATATGTGTTTAAGGGGAGATCTCATCTGAATAAAAAATACAAA
CTACATAAAAACTACATTCAGTGTGATGAATCATGGCATCATTCCATCTTCTTATCTGAGTAGGT
AAGATGAGTAAGT
Found at i:37352 original size:160 final size:160
Alignment explanation
Indices: 37088--37408 Score: 642
Period size: 160 Copynumber: 2.0 Consensus size: 160
37078 TTCTATTGCC
37088 GACTGCCACTCGGCTGCTATTTCTGGGGCTTTACTCAAAGCCAACCTCTTGAACCAACCACTCCA
1 GACTGCCACTCGGCTGCTATTTCTGGGGCTTTACTCAAAGCCAACCTCTTGAACCAACCACTCCA
37153 AAAGAAGCCGGAGCCTACACCAATCCCAACCAAGAAATAAGTGATTGATTTCTGGACACCTAATT
66 AAAGAAGCCGGAGCCTACACCAATCCCAACCAAGAAATAAGTGATTGATTTCTGGACACCTAATT
37218 TGATCCCTCCTTAGCGGGATCAATGACGAT
131 TGATCCCTCCTTAGCGGGATCAATGACGAT
37248 GACTGCCACTCGGCTGCTATTTCTGGGGCTTTACTCAAAGCCAACCTCTTGAACCAACCACTCCA
1 GACTGCCACTCGGCTGCTATTTCTGGGGCTTTACTCAAAGCCAACCTCTTGAACCAACCACTCCA
37313 AAAGAAGCCGGAGCCTACACCAATCCCAACCAAGAAATAAGTGATTGATTTCTGGACACCTAATT
66 AAAGAAGCCGGAGCCTACACCAATCCCAACCAAGAAATAAGTGATTGATTTCTGGACACCTAATT
37378 TGATCCCTCCTTAGCGGGATCAATGACGAT
131 TGATCCCTCCTTAGCGGGATCAATGACGAT
37408 G
1 G
37409 GTACGCCAAG
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
160 161 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (160 bp):
GACTGCCACTCGGCTGCTATTTCTGGGGCTTTACTCAAAGCCAACCTCTTGAACCAACCACTCCA
AAAGAAGCCGGAGCCTACACCAATCCCAACCAAGAAATAAGTGATTGATTTCTGGACACCTAATT
TGATCCCTCCTTAGCGGGATCAATGACGAT
Found at i:41105 original size:665 final size:669
Alignment explanation
Indices: 39720--47375 Score: 5330
Period size: 665 Copynumber: 11.2 Consensus size: 669
39710 ACTAGTATTC
*
39720 GAATCTTGTTTCGATTTAATTGGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * *
39785 AAAAAACCCTAAAATAGTTTTGGAGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAATT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
39850 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-
131 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACA
** *
39914 GGTTTTTGTATAAAAATGCGTTTCGGGGGT-CTGACTCAGTTTTGCATGATTTTTGGCAGAAAGT
196 GG-TTTTGGCTAAAAATGCGTTTC-GGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGA
* *
39978 CTTCTC-AAGATATCTATATTCATCTAATCAACACTCTCAACCACAATGCATTTACGGATTTATT
259 CTTCTCGAA-ATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATT
** * *
40042 TTTACGAGTATCTTAATCTTGTTTTTATTTAATTAAAAATAAATTCAGAAAAAATGGATAAACGA
323 TTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGA
* ** * *
40107 TATTTGAAGCGTGAAAAATTCTGAAATA-TTTTGGTGTTGAATTATATGATTTTCCTGAGTATTG
388 TATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTG
40171 TGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTA
453 TGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTA
* *
40236 TACTAACCATCACGATTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTT
518 TACTAACCATCACG-GTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTT
* *
40301 TTGGCAGAATGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCATTT
582 TTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT-AGCCACAATGGATTT
* *
40366 ACGAATTTATTTTTACAAGTATCT
646 ACGGATTTATTTTTACGAGTATCT
40390 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
*
40455 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTATGAGTATTGTGGAAAAAAATT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* *
40520 GGGGAAAAACTTTTCGTGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACGTTA-CATCAC
131 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTAC-TAACCATCAC
* * * * * *
40584 -GGTTTTGGCTAAAAATGCGTTTCGGGGTCATGGCTAAGTTTTGTATGA-TTTTAGAAGAAAGAC
195 AGGTTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGAC
* * * * * * * *
40647 TTCTCGAAATATCTATATTCATCTAACCAA-A-TCACACCCAGATTGGATTTACGGATTTGTTTT
260 TTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATTTT
* * * *
40710 TACGAGCATGTGAATCTTGTAAT-GATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGAT
325 TACGAGTATCTTAATCTTGT-TTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGAT
* * * *
40774 ATTAGAAGCATGAAAAACCCTAAAATATTGTTGGGGTTGAATTATATGATTTTTCTGAGTATTGT
389 ATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGT
* * ** * *
40839 GGCAAAAAATTGGAGAAAAAC-TTTTTAGGTCAG-TTTTTTTGCAAAATTTTAGCCGAAATCGTG
454 GGAAAAAAATTGGGGAAAAACATTTCGA-ATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTA
* * *
40902 TAATAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCACGGCTAAGTTTTGCATGATTTT
518 TACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTT
*
40967 TGGCAGAAAAACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTTAGCCACAATGGATTTA
583 TGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTC-TAGCCACAATGGATTTA
*
41032 CGGATATATTTTTACGAGTATCT
647 CGGATTTATTTTTACGAGTATCT
* *
41055 GAATCTTGTTTCGATTTAGTTAGAAATAAATTCAGAAAAAAATAGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
** * * *
41120 GAAAAATTCTGAAATATTTTTGGTGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAAT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGG-AAAAAAAT
* * * *
41185 TTGGGAAAAACTTTTCAGATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTATTAACCATCA
130 TGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCA
* * * * *
41250 CAGTTTTTTGGCTAAAAATGTGTTTCGGGGGCCTAACTCAGTTTTACATGATTTTTGGCAGAAAG
194 CAG-GTTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAG
41315 ACTTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATT
258 ACTTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATT
41380 TTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAGTGGAAAAACG
323 TTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAA-TGGAAAAACG
* **
41445 ATATTTGAAGCGTGAAAAATTCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATT
387 ATATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATT
41510 GTGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTTGCAAAATTTTAGCCGAAATCG
452 GTGGAAAAAAATTGGGGAAAAACATTTCGAATCAG-TTTTTTTTGCAAAATTTTAGCCGAAATCG
41575 TATACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATT
516 TATACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATT
* * * * * * *
41640 TTTGGCAGGAAGACTTCTCGAAACATCTATATTCTTCTGACCAAATCTC-AGCTACATTGG-TTT
581 TTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTAGCCACAATGGATTT
* * *
41703 ATGGATTTCTTTTTACGAGCATCT
646 ACGGATTTATTTTTACGAGTATCT
** *
41727 GAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCAT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * *
41792 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATAGGATTTATCTGAGTATTGTGGCAAAAAATT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* * *
41857 GGTGAAAAACTTTTCGGGTCAG---TTTGCAAAATTCTAGCCAAAATCGTGTACTAACCATCACA
131 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACA
* * * * *
41919 GTTTTTGGCTAAAAATGCGTTTC-GGGCCCTGGCTCAGTTTTGCATGATTTTTGGCTGAATGACT
196 GGTTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
*
41983 TCTCGAAATATCTATATTCATCTAATCAA-ATCTCTCAGCCACAATGCATTTATAGATTTATTTT
261 TCTCGAAATATCTATATTCATCTAATCAACA-CTCTCAGCCACAATGCATTTACAGATTTATTTT
* *
42047 TACAAGTATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGAT
325 TACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAACGAT
*
42112 ATTAGAAGCGTGTAAAACCCCT-AAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTG
389 ATTAGAAGCGTG-AAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTG
* * ** *
42176 TGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG--TTTTTTGCAAAATTTTAGCCGAAATCGTG
453 TGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTA
* ** * * * * * * * *
42239 TACTGAA-AAAAAGGTCTGTTAATAAATAGGTTTATAAC-CTTTTAACGCGAATCCGCAAT--TT
518 TACT-AACCATCA---CGGTT--T---T-GGCTAAAAACGCGTTT--CG-G----GGCCATGGCT
* * * *** * ** ** *
42300 AAATTTAATACA-GAATTAAAAAAAGGTCCGTTAATAGGTTTATAACCTTAATTTAATGCTCTTA
566 CAGTTT--TGCATG-ATT----TTTGG-CAG--AA-A-GACT-T---CTCGA---AAT-ATC-TA
* * * ** *
42364 TGGTTAGGAGCGATCTAATGGCTAAGGTCAATCTAAACCA-AA-CCA-TCACGGTATTTGGCTAA
610 T-ATT-----C-ATCTAAT--C-AA-ATC--TCT-AGCCACAATGGATTTACGG-A-TT---T-A
* * **
42426 TGCGTTT-CGGGGCTCT
655 T--TTTTACGAGTATCT
** * * * * ** ** ** ** * * *
42442 GGCTCAGTT-TTGCATGATTT--TTGGCAGAATAACTTCTCGAAGTATTTATATTCATCTA-ATC
1 GAATC--TTGTTTC--GATTTAATTAG-A-AATAAATTC-AGAAAAAAATGGA-AAAACGATATT
* * ** * ** ** * **** * * *
42503 A-AATC-TCAGCCATAATGCGT-TTACGGATTTATTTTTACAAGTATCTGAATCTTGTT-TCGAT
58 AGAAGCGT--G--AAAAACCCTAAAATAGTTTTGGCGTT-GAATTATATG-AT-TT-TTCT-GA-
* * * * * * * * ****** *
42564 TTAAT-TAGAAATAAATTCAGAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCT-AAAAT
113 GTATTGTGGAAAAAAATT--G-----GGGAAAAAC--TTTTCG--G-GT-CAGTTTTTTGCAAA-
* * * ** ** * * ******
42627 AGTTTTAG-CGTTGAAT--TATA-TGA-TTTTTCTGAGTATTGTGGC-AAGAAATTGGGGAAAAA
164 A-TTTTAGCCG--AAATCGTGTACTAACCATCACAG-GT-TT-TGGCTAA-AAA-TGCGTTTCGG
** ** ** * * * * ** * * ** *
42686 CTTTTTGGGTCAGTTTTTTACA-AAATTTTAGTTGAAA-TCGTGTACT-GACCATCA-CGGTGTT
221 GGTCCTGACTCAG--TTTTGCATGATTTTTGGCAGAAAGAC-T-T-CTCGA-AAT-ATCTATATT
** * * * * * * ***
42747 -GGCTAA-AAACGCGTTTCGGTGC-C-ATGGCTCAGTTTTGCATGATTT-TTGGCA-GAAAG-AC
279 CATCTAATCAACAC-TCTCAG-CCACAAT-G--CA--TTTACA-GATTTATTTTTACG--AGTA-
* * * * ** * ** * ***
42805 TCCTCGAAATATCTATATTC-ATCTAA--CCAAAT--CTT-AG-CTACATAGGATTTACGGAT-T
333 T-CT--TAATCT-TGT-TTCGATTTAATTAGAAATAAATTCAGAAAAAAT-GGAAAAAC-GATAT
*** * ** * * * ** * * * * ** * * ***
42862 T-G--TTTTTACGAGCATCTG-AATCTTGTTAAG-ATTTAATTAGA-AATAAATTCAGA-AAAAA
391 TAGAAGCGTGAAAAAC-CCTGAAATATT-TTTGGCGTTGAATTATATGAT-TTTTCTGAGTATTG
** ** *** *** * *
42920 TGGAAAAACGATATTAGAAGCGTGAAAAAC-CCTAAAAT-A-TTTTTGGCGTTGAATTATA--TG
453 TGGAAAAA--A-ATT-G--G-G-GAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCG
** * *** **** * * * * **
42980 ATTTTTC-TGAGTATTGGGCA--AAAAATTAGGAC-AAAAA--CTTTTC-GGG-TA-AG-T-TTT
510 A--AATCGT-A-TACTAACCATCACGGTTTTGG-CTAAAAACGCGTTTCGGGGCCATGGCTCAGT
** * * * * ** * **
43034 TTTGCAAAATTTTT-GCCGAAA-TCGTGTAT-TAACCATC-ATGGTTTTTGGCTAA--AAATGCG
570 TTTGCATGATTTTTGGCAGAAAGAC-T-TCTCGAAATATCTAT-ATTCAT--CTAATCAAAT-C-
* * * * * * * *
43093 TTCCGAGGGCCCTCACT-CAGTTT-TGCA-TGATTTTTGGCAGAAAG-ACTTCT
628 -T-CTA--G-CCACAATGGA-TTTACGGATTTATTTTT-AC-G--AGTA--TCT
* * * * * ** * ***
43143 CGAAATATATATATTC-ATCTAA-T-CAAAT--CTCTCAG-CCACAATGGATTTACGGATTTATT
1 -G-AATCT-TGT-TTCGATTTAATTAGAAATAAAT-TCAGAAAAAAATGGAAAAAC-GA--TATT
*** ** * * * * * * * ** * ** ***
43202 TTTA-C--G-AGTA-TCT-GAAT-CTTGTT-TCGATTTAATTAGA-AATAAATTCAGAAAAAAAT
58 AGAAGCGTGAAAAACCCTAAAATAGTT-TTGGCG-TTGAATTATATGAT-TTTTCTGAGTATTGT
* *
43258 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCATTGAATTATATGATTTTT
120 GGAAAAA--A-ATT-G--G-G-GAAAAA--C-----T--TTTCGG----G---T-CA-G-TTTTT
** * * ** * ** ** * * * *
43323 CTG-AGTATTGTGGCAAAAAAAT-G-GGAAAAACTTTTCGGGTCAGTTTTTTGC-AAAATTTTAG
158 -TGCAAAATTTTAGC--CGAAATCGTGTACTAAC-CATC---ACAGGTTTTGGCTAAAA--AT-G
*** * * * ** * * *
43384 CCAAAATC-GTGTACTGACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGT
213 -C-GTTTCGGGGTCCTGA-C-TCA--G-TTTT-GC-----ATG-ATTT-TTGG--CAGA--AAGA
* ** * * * * * * * * * *
43448 TTTGCAT-GATTTTTGGCAGAAAGTCTTCTCAAGATATCTATATTCA-TCTAATCAACACTCTCA
259 CTT-C-TCGAAATAT--C-TATATTCATCT----A-ATC-A-A--CACTCTCAGCCACAAT-GCA
*** *
43511 GCCACAATGCATTTACGGATTTATTTTTACGAGTATCTTAATCTTGTTT--TTTTAATTA-AAAT
309 TTTAC-A-G-ATTT----A--T--TTTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAAT
* * ** * *
43573 AAATTCAGAAAAAATGGATAAACGATATTTGAAGCGTGAAAAATTCTGAAATAGTTTAGGCGTTG
363 AAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTG
* * * * **
43638 AATGATATGATTTTTCTGAGTATTGT-GACATATAATTGGGGAAAAACTTTTCGGGTCAG--TTT
428 AATTATATGATTTTTCTGAGTATTGTGGA-AAAAAATTGGGGAAAAACATTTCGAATCAGTTTTT
* * * * * *
43700 CTTGAAAAATTTTAGCCGAAATCGTGTACT-ACAATTACGGTTTTGACTAAAAACGCGTTTCGGG
492 TTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGG
* * *
43764 GCCATGGCTCAGTTTTGAATGATTTTTGGCAG-AAGACTCCTCAAAATATCTATATTCATCTAA-
557 GCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAAT
* * * *
43827 CGAAATCTC-AGCCACATTGGATTTACGGATTTGTTTTTGCGAGCATCT
622 C-AAATCTCTAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCT
** * *
43875 GAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAAGGAAATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * *
43940 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTAAGCATTGTGG-CAAAAATT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
** ** * * * *
44004 GGCACAAAAACTTTTCGGGTCAAATTGTTGCAAAATTTTAGCCAAAATCGTGTACTTACCAACAC
131 GG-GGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC
* * * *
44069 -GGTTTTTTGCTAAAAATGTGTTTCGGGGACCTGACTTAGTTTTGCATGATTTTTGGCAGAAAGA
195 AGG-TTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGA
* * * * * * *
44133 CTTCTAGAAATATCTATATTCATCTAACCAA-A-TCTCACCCACATTGGATTTACGGATTTGTTT
259 CTTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATTT
* *
44196 TTACGAGTATCTGAATCTTGTTAT-GATTTAATTAGAAGTAAATTCAGAAAAAAAATGGAAAAAC
324 TTACGAGTATCTTAATCTTGTT-TCGATTTAATTAGAAATAAATTCAG--AAAAAATGGAAAAAC
* * * *
44260 GATATCAGAAGCGTTG-AAAGCCCTAAAATAATTTTGGCGTTGAATTATATGATTTTTCTGAGTA
386 GATATTAGAAGCG-TGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTA
* * **
44324 TTGTGGCAAAAAAA-TGGGGAAAATCTTTTCGGGTCAG-TTTTTTTGCAAAATTTTAGCC-AAGA
450 TTGTGG-AAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAA-A
* * *** * * *
44386 TCGTGTACTGACCATCACGGTTTTTGGCTAAAAATATGTTTCGGGGCCCTGACTAAGTTTTGCAT
513 TCGTATACTAACCATCACGG-TTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCAT
** *
44451 GATTTTTGGCAGATTGACTTCTCG--------------A---AATC---TCTC-AGCCACAATGC
577 GATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTAGCCACAATGG
*
44495 ATTTACGGATTTATTTTTACAAGTATCT
642 ATTTACGGATTTATTTTTACGAGTATCT
* * * * * * *
44523 GAATCTTGTTTCGACTTATTTATAAATAAATTCAGAAAAAATTGGAAAAACAATATTAAAAGCCT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * * *
44588 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATACGATTTTTTTTTAGTATTGAGGCAAAAAAT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGA-TTTTTCTGAGTATTGTGGAAAAAAAT
* * * *
44653 TGGGGAAAAACTTTTCGGATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGT-TTCGACTTAT
130 TGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACT-AAC-CAT
* * * *
44717 CAC-GGTTTTTTGGCTAAAAACGCGTTTCGGGGGCTTGACTCAATTTTGCATGATTTTTGGCAGA
192 CACAGG--TTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGA
*
44781 AAGACTTCTCGAAATATCTATATTCATCTATTCAA-ATCTCTCAGCCACAATGCATTTACAGATT
255 AAGACTTCTCGAAATATCTATATTCATCTAATCAACA-CTCTCAGCCACAATGCATTTACAGATT
* * * *
44845 TATTTTTACGAGTATCTGAATATTGTTTTGATTTAATTAGAAAAAATATTCAGAAAAATATGGAA
319 TATTTTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAA-ATTCAGAAAAA-ATGGAA
* ** *
44910 AAACGATATTTGAAGCGTGAAAAATTCTGAAATATTTTTTGGCGTTGAATCATATGATTTTTCTG
382 AAACGATATTAGAAGCGTGAAAAACCCTGAAATA-TTTTTGGCGTTGAATTATATGATTTTTCTG
* **
44975 AGTATTGTGG-AAAAAATTGGGGAAAAACTTTTCGTGTCAG--TTTTTTG-AAAATTTTAGCCGA
446 AGTATTGTGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGA
* * *
45036 AATCGTGTACTAACCATCACGGTTTTGGCTAAAATCGCGCTTCGGGGCCATGGCTCAGTTTTGCA
511 AATCGTATACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCA
* *
45101 TGATTTTTGGCAGGAAGACTTCTCGAAATATCTATATACATCTAATCAAATCTCTCAGCCACAAT
576 TGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT-AGCCACAAT
* ** *
45166 GCATTTATAGATTTATTTTTACAAGTATCT
640 GGATTTACGGATTTATTTTTACGAGTATCT
45196 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * *
45261 GTAAAACCCT-AAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAACT
66 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* **
45325 GGGGAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGTTGAAATCGTGTACTAACCATCAC-
131 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACA
* * * *
45389 GGTTTTGGCTAAAAACGCGTTTCGGAG-CCATGACTCAGTTTTGCATGATTTTAGGCAGAGAGAC
196 GGTTTTGGCTAAAAATGCGTTTCGGGGTCC-TGACTCAGTTTTGCATGATTTTTGGCAGAAAGAC
* * * * * * * *
45453 TCCTCGAAATATCTTTATTCATCTAA-CAA-AATCTC-GCAACATTGGATTTACGGATTTGTTTT
260 TTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATTTT
* ** *
45515 TACGAGTATCTGAATCTTGTTAAGATTTATTTAGAAATAAATTCAGAAAAAAAATGGAAAAACGA
325 TACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAG--AAAAAATGGAAAAACGA
* * *
45580 TATTAGAAGCGTGAAAAACCGTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATCG
388 TATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTG
* * ** *
45645 TGGCAAAAAATT-GGGACAAAAAATTTTCGGGTCAG-ATTTTTTGCAAAATTTTAGCTC-AAATC
453 TGGAAAAAAATTGGGGA-AAAACA-TTTCGAATCAGTTTTTTTTGCAAAATTTTAGC-CGAAATC
* * * * * **
45707 GTGTACTAGCCATCACGGTTTTTTGCTAAAAATGCGTTTCGGGGCCCTCACTCAGTTTTGCATGA
515 GTATACTAACCATCACGG-TTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGA
* *
45772 TTTTTTGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCA
579 TTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCT-AGCCACAATGGA
**
45837 TTTACGGATTTATTTTTAAAAGTATCT
643 TTTACGGATTTATTTTTACGAGTATCT
* * *
45864 GAATCTTGTTTCGATTT-ATTTGTAAATAAATTCAGAAAAAAATTGGCAAAATGATATTA-AGAG
1 GAATCTTGTTTCGATTTAATTAG-AAATAAATTCAGAAAAAAA-TGGAAAAACGATATTAGA-AG
* * *
45927 CGTGAAAAACCCTAAAATAGTTATGGCGTTGAATTATATGATTTTTCTGAGTATTGAGGCAAAAA
63 CGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAA
* *
45992 ATGGGGGAAAAACTTTTCGGATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCAT
128 ATTGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCAT
* * * *
46057 CACAGTTTTTTGGCTAAAAACGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAA
192 CACAG-GTTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAA
*
46122 AGACTTCTCGAAATATCTATATTCATCTAATCAA-ATCTCTCAGCCACAATGCATTTACGGATTT
256 AGACTTCTCGAAATATCTATATTCATCTAATCAACA-CTCTCAGCCACAATGCATTTACAGATTT
* * * * *
46186 GTTTTTACGAGCATCTGAATCTTGTTACGATTTAATTAGAAATAAATTCAGAAAAAAATTGAAAA
320 ATTTTTACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAA
* * * *
46251 ATGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTAAGC
384 ACGATATTAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGT
* * * ** * * *
46316 ATTGTGG-CAAAAATTGGGACAAAAACGTTTCGGGTCAG--ATTGTTGCAAAATTTTAGCCAAAA
449 ATTGTGGAAAAAAATTGGG-GAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAA
* * * * * * * *
46378 TCGTGTACTGACCAACACGGTTTTTTGCTAAAAATGTGTTTCGGGGTTC-TGACTCAGTTTTGCA
513 TCGTATACTAACCATCACGG-TTTTGGCTAAAAACGCGTTTCGGGG-CCATGGCTCAGTTTTGCA
* * * * *
46442 TGATTTTTTGGCAGAAAGACTTCTAGAAATATCTATATTCATCTAACCAAAACTC-ACCCACATT
576 TGA-TTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTAGCCACAAT
* * *
46506 GGATTTACGGATTTGTTTTGACGAGCATCT
640 GGATTTACGGATTTATTTTTACGAGTATCT
*
46536 GAATCTTGTCAT-GATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCG
1 GAATCTTGT-TTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCG
* * *
46600 TGAAAAACCCTAAAATAGTTTAGGCGTTGAATGATATGATTTTTCTGAGTATTGT-GACAAAAAT
65 TGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAAT
46664 TGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC
130 TGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC
* * * * *
46729 -GGTTTTTTGGCTAAAAACGCTTTTCGGGGGCTTGACTCAATTTTGCATGATTTTTGGCAGAAAG
195 AGG--TTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAG
* *
46793 ACTTCTCGAAATATCTATATTCATCTAATCATA-TCTCTCAGCCACAATGCATTTACGGATTTAT
258 ACTTCTCGAAATATCTATATTCATCTAATCA-ACACTCTCAGCCACAATGCATTTACAGATTTAT
* * *
46857 TTTTACGAGTATCTGAATCTTGTTTC-ATTTAATCAGAAAAAAAATTCAGAAAAAAATGGAAAAA
322 TTTTACGAGTATCTTAATCTTGTTTCGATTTAATTAG-AAATAAATTCAG-AAAAAATGG-AAAA
* **
46921 ACGATATTTGAAGCGTGAAAAAATTCTGAAATATTTTTTGGCGTTGAATTATATGATTTTTTCTG
384 ACGATATTAGAAGCGTG-AAAAACCCTGAAATA-TTTTTGGCGTTGAATTATATGA-TTTTTCTG
* * **
46986 AGTATTGTGGAAAAAATTTGGGGAAAAACTTTTCGTGTCAG-TTTTTTTG-AAAATTTTTAGCCG
446 AGTATTGTGGAAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAA-TTTTAGCCG
* *
47049 AAATCGTGTACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATAGCTCAGTTTTGC
510 AAATCGTATACTAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGC
* * *
47114 ATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAACCAAATCTC-AGCCACATT
575 ATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTAGCCACAAT
* *
47178 GGATTTACGGATTTGTTTTTACGAGCATCT
640 GGATTTACGGATTTATTTTTACGAGTATCT
**
47208 GAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAAAATGGAAAAACGATATTAGAAGC
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAG--AAAAAAATGGAAAAACGATATTAGAAGC
* * *
47273 GTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAA
64 GTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAA
* *
47338 TTTGGGAAAAACTTTTCAGGTCAGTTTTTTGCAAAATT
129 TTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATT
Statistics
Matches: 5530, Mismatches: 996, Indels: 915
0.74 0.13 0.12
Matches are distributed among these distances:
648 127 0.02
649 31 0.01
650 38 0.01
651 65 0.01
652 117 0.02
653 23 0.00
654 115 0.02
655 44 0.01
659 23 0.00
660 1 0.00
661 9 0.00
662 45 0.01
663 50 0.01
664 199 0.04
665 534 0.10
666 233 0.04
667 302 0.05
668 229 0.04
669 313 0.06
670 382 0.07
671 215 0.04
672 439 0.08
673 444 0.08
674 201 0.04
675 269 0.05
676 71 0.01
677 11 0.00
681 9 0.00
682 3 0.00
683 1 0.00
684 6 0.00
685 5 0.00
686 2 0.00
687 8 0.00
688 11 0.00
689 10 0.00
690 9 0.00
691 13 0.00
692 6 0.00
693 2 0.00
694 5 0.00
695 8 0.00
696 11 0.00
697 11 0.00
698 5 0.00
699 11 0.00
700 8 0.00
701 16 0.00
702 21 0.00
703 10 0.00
704 12 0.00
705 20 0.00
706 9 0.00
707 9 0.00
708 20 0.00
709 19 0.00
710 12 0.00
711 4 0.00
712 1 0.00
713 1 0.00
714 2 0.00
715 11 0.00
716 9 0.00
717 5 0.00
718 20 0.00
719 17 0.00
720 11 0.00
721 15 0.00
722 8 0.00
723 9 0.00
724 14 0.00
725 5 0.00
726 4 0.00
728 12 0.00
729 9 0.00
730 13 0.00
731 18 0.00
732 16 0.00
733 24 0.00
734 8 0.00
735 31 0.01
736 61 0.01
737 18 0.00
738 21 0.00
739 21 0.00
740 27 0.00
741 34 0.01
742 33 0.01
743 42 0.01
744 35 0.01
745 41 0.01
746 13 0.00
747 11 0.00
748 8 0.00
749 15 0.00
750 14 0.00
751 17 0.00
752 15 0.00
753 5 0.00
754 7 0.00
755 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (669 bp):
GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACA
GGTTTTGGCTAAAAATGCGTTTCGGGGTCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
TCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTATTTTT
ACGAGTATCTTAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATAT
TAGAAGCGTGAAAAACCCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGG
AAAAAAATTGGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTATAC
TAACCATCACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGG
CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTAGCCACAATGGATTTACGGA
TTTATTTTTACGAGTATCT
Found at i:41840 original size:334 final size:333
Alignment explanation
Indices: 39720--42242 Score: 3599
Period size: 335 Copynumber: 7.6 Consensus size: 333
39710 ACTAGTATTC
*
39720 GAATCTTGTTTCGATTTAATTGGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * * * *
39785 AAAAAACCCTAAAATAGTTTTGGAGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAATT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
*
39850 GGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
131 GGGGAAAAACTTTTCGAGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
** * * *
39915 GTTTTTGTATAAAAATGCGTTTCGGGGGTC-TGACTCAGTTTTGCATGATTTTTGGCAGAAAGTC
196 G-TTTTGGCTAAAAATGCGTTTC-GGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGAC
*
39979 TTCTC-AAGATATCTATATTCATCTAATCAACACTCTCAACCACAATGCATTTACGGATTTATTT
259 TTCTCGAA-ATATCTATATTCATCTAATCAA-ACTCTCAGCCACAATGCATTTACGGATTTATTT
40043 TTACGAGTATCT
322 TTACGAGTATCT
* ** * * *
40055 TAATCTTGTTTTTATTTAATTAAAAATAAATTCAG-AAAAAATGGATAAACGATATTTGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
** * * *
40119 GAAAAATTCTGAAATA-TTTTGGTGTTGAATTATATGATTTTCCTGAGTATTGTGGAAAAAAATT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* * *
40183 GGGGAAAAACATTTCGAATCAGTTTTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCA
131 GGGGAAAAACTTTTCGAGTCAG--TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCA
* *
40248 CGATTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAATGA
194 CG-GTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGA
*
40313 CTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGAATTTATTT
258 CTTCTCGAAATATCTATATTCATCTAATCAAA-CTCTCAGCCACAATGCATTTACGGATTTATTT
*
40378 TTACAAGTATCT
322 TTACGAGTATCT
40390 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* *
40455 GAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTATGAGTATTGTGGAAAAAAATT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* *
40520 GGGGAAAAACTTTTCGTGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACGTTA-CATCAC
131 GGGGAAAAACTTTTCGAGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTAC-TAACCATCAC
* * * * *
40584 GGTTTTGGCTAAAAATGCGTTTCGGGGTCATGGCTAAGTTTTGTATGA-TTTTAGAAGAAAGACT
195 GGTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACT
* * * * * * *
40648 TCTCGAAATATCTATATTCATCTAACCAAA-TCACACCCAGATTGGATTTACGGATTTGTTTTTA
260 TCTCGAAATATCTATATTCATCTAATCAAACTCTCAGCCACAATGCATTTACGGATTTATTTTTA
* *
40712 CGAGCATGT
325 CGAGTATCT
* *
40721 GAATCTTGTAAT-GATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCA
1 GAATCTTGT-TTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCG
* * *
40784 TGAAAAACCCTAAAATATTGTTGGGGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAT
65 TGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAAT
* * *
40849 TGGAGAAAAACTTTT-TAGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACCATC
130 TGGGGAAAAACTTTTCGA-GTCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATC
* * * *
40913 ACGGTTTTGGCTAAAAACGCGTTTCGGGGCCACGGCTAAGTTTTGCATGATTTTTGGCAGAAAAA
193 ACGGTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGA
* * *
40978 CTTCTCGAAATATCTATATTCATCTAATCAAATCTCTTAGCCACAATGGATTTACGGATATATTT
258 CTTCTCGAAATATCTATATTCATCTAATCAAA-CTCTCAGCCACAATGCATTTACGGATTTATTT
41043 TTACGAGTATCT
322 TTACGAGTATCT
* *
41055 GAATCTTGTTTCGATTTAGTTAGAAATAAATTCAGAAAAAAATAGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
** * *
41120 GAAAAATTCTGAAATATTTTTGGTGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAAT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGG-AAAAAAAT
* *
41185 TTGGGAAAAACTTTTC-AGATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTATTAACCATC
130 TGGGGAAAAACTTTTCGAG-TCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATC
* * ** *
41249 ACAGTTTTTTGGCTAAAAATGTGTTTCGGGGGCC-TAACTCAGTTTTACATGATTTTTGGCAGAA
193 AC-G-GTTTTGGCTAAAAATGCGTTTC-GGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAA
*
41313 AGACTTCTCGAAATATCTATATTCATCTAATCAACACTCTCAGCCACAATGCATTTACAGATTTA
255 AGACTTCTCGAAATATCTATATTCATCTAATCAA-ACTCTCAGCCACAATGCATTTACGGATTTA
41378 TTTTTACGAGTATCT
319 TTTTTACGAGTATCT
* * *
41393 TAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAGTGGAAAAACGATATTTGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
** *
41458 GAAAAATTCTGAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* * *
41523 GGGGAAAAACATTTCGAATCAGTTTTTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATC
131 GGGGAAAAACTTTTCGAGTCAG---TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATC
* *
41588 ACGGTTTTGGCTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGGAAGA
193 ACGGTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGA
* * * * * * * * *
41653 CTTCTCGAAACATCTATATTCTTCTGACCAAA-TCTCAGCTACATTG-GTTTATGGATTTCTTTT
258 CTTCTCGAAATATCTATATTCATCTAATCAAACTCTCAGCCACAATGCATTTACGGATTTATTTT
*
41716 TACGAGCATCT
323 TACGAGTATCT
** *
41727 GAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCAT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* * *
41792 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATAGGATTTATCTGAGTATTGTGGCAAAAAATT
66 GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* * * *
41857 GGTGAAAAACTTTTCGGGTCAG---TTTGCAAAATTCTAGCCAAAATCGTGTACTAACCATCACA
131 GGGGAAAAACTTTTCGAGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-
* * * *
41919 GTTTTTGGCTAAAAATGCGTTTC-GGGCCCTGGCTCAGTTTTGCATGATTTTTGGCTGAATGACT
195 GGTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACT
**
41983 TCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTATAGATTTATTTTT
260 TCTCGAAATATCTATATTCATCTAATCAAA-CTCTCAGCCACAATGCATTTACGGATTTATTTTT
*
42048 ACAAGTATCT
324 ACGAGTATCT
*
42058 AAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
1 GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
* *
42123 GTAAAACCCCT-AAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAT
66 G-AAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAAT
*
42187 TGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACT
130 TGGGGAAAAACTTTTCGAGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACT
42243 GAAAAAAAGG
Statistics
Matches: 1957, Mismatches: 194, Indels: 75
0.88 0.09 0.03
Matches are distributed among these distances:
328 99 0.05
329 21 0.01
330 120 0.06
331 304 0.16
332 51 0.03
333 106 0.05
334 340 0.17
335 350 0.18
336 118 0.06
337 166 0.08
338 234 0.12
339 48 0.02
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (333 bp):
GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
GAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
GGGGAAAAACTTTTCGAGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
GTTTTGGCTAAAAATGCGTTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGAAAGACTT
CTCGAAATATCTATATTCATCTAATCAAACTCTCAGCCACAATGCATTTACGGATTTATTTTTAC
GAGTATCT
Found at i:43461 original size:334 final size:335
Alignment explanation
Indices: 42404--47375 Score: 6695
Period size: 334 Copynumber: 14.9 Consensus size: 335
42394 ATCTAAACCA
* * *
42404 AACCATCACGGTATTTGGCT---AATGCGTTTCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* * *
42466 CAGAATA-ACTTCTCGAAGTATTTATATTCATCTAATCAAA--TCTCAGCCATAATGCG-TTTAC
66 CAGAA-AGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATG-GATTTAC
*
42527 GGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAA-
129 GGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAT
*
42590 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTAGCGTTGAATTATATGATTTTT
194 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTT
* * * **
42655 CTGAGTATTGTGGCAAGAAATTGGGGAAAAACTTTTTGGGTCAGTTTTTTACAAAATTTTAGTTG
259 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
42720 AAATCGTGTACT
324 AAATCGTGTACT
* * * * * *
42732 GACCATCACGG-TGTTGGCTAAAAACGCGTTTCGGTGCCATGGCTCAGTTTTGCATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* * *
42796 CAGAAAGACTCCTCGAAATATCTATATTCATCTAACCAAATCT-T-AGCTAC-ATAGGATTTACG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAAT-GGATTTACG
* * **
42858 GATTTGTTTTTACGAGCATCTGAATCTTGTTAAGATTTAATTAGAAATAAATTCAG-AAAAAATG
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
*
42922 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
** * *
42987 TGAGTATTG-GGCAAAAAATTAGGACAAAAACTTTTCGGGTAAGTTTTTTTGCAAAATTTTTGCC
260 TGAGTATTGTGGCAAAAAATT-GGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCC
*
43051 GAAATCGTGTATT
323 GAAATCGTGTACT
* * *
43064 AACCATCATGGTTTTTGGCTAAAAATGCGTTCCGAGGGCCCTCACTCAGTTTTGCATGATTTTTG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCG-GGGCCCTGACTCAGTTTTGCATGATTTTTG
*
43129 GCAGAAAGACTTCTCGAAATATATATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
43194 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
*
43259 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCATTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
* *
43324 TGAGTATTGTGGCAAAAAAAT-GGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCAA
260 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGA
43388 AATCGTGTACT
325 AATCGTGTACT
*
43399 GACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* *
43464 CAGAAAGTCTTCTC-AAGATATCTATATTCATCTAATCAACA-CTCTCAGCCACAATGCATTTAC
66 CAGAAAGACTTCTCGAA-ATATCTATATTCATCTAATCAA-ATCTCTCAGCCACAATGGATTTAC
* *
43527 GGATTTATTTTTACGAGTATCTTAATCTTGTTT--TTTTAATTA-AAATAAATTCAG-AAAAAAT
129 GGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAT
* * ** * * *
43588 GGATAAACGATATTTGAAGCGTGAAAAATTCTGAAATAGTTTAGGCGTTGAATGATATGATTTTT
194 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTT
* * * * *
43653 CTGAGTATTGTGACATATAATTGGGGAAAAACTTTTCGGGTCAGTTTCTTGAAAAATTTTAGCCG
259 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
43718 AAATCGTGTACT
324 AAATCGTGTACT
* * * * * * *
43730 -ACAATTACGG-TTTTGACTAAAAACGCGTTTCGGGGCCATGGCTCAGTTTTGAATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* * *
43793 CAG-AAGACTCCTCAAAATATCTATATTCATCTAA-CGAAA--TCTCAGCCACATTGGATTTACG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATC-AAATCTCTCAGCCACAATGGATTTACG
* * * **
43854 GATTTGTTTTTGCGAGCATCTGAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAATG
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* * *
43919 GAAAAAGGAAATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
* * ** ** * *
43984 TAAGCATTGTGGC-AAAAATTGGCACAAAAACTTTTCGGGTCAAATTGTTGCAAAATTTTAGCCA
260 TGAGTATTGTGGCAAAAAATTGG-GGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
44048 AAATCGTGTACT
324 AAATCGTGTACT
* * * * * *
44060 TACCAACACGGTTTTTTGCTAAAAATGTGTTTCGGGGACCTGACTTAGTTTTGCATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* * * *
44125 CAGAAAGACTTCTAGAAATATCTATATTCATCTAACCAAA--TCTCACCCACATTGGATTTACGG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGG
* *
44188 ATTTGTTTTTACGAGTATCTGAATCTTGTTAT-GATTTAATTAGAAGTAAATTCAGAAAAAAAAT
131 ATTTATTTTTACGAGTATCTGAATCTTGTT-TCGATTTAATTAGAAATAAATTCAG-AAAAAAAT
* * *
44252 GGAAAAACGATATCAGAAGCGTTG-AAAGCCCTAAAATAATTTTGGCGTTGAATTATATGATTTT
194 GGAAAAACGATATTAGAAGCG-TGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTT
* *
44316 TCTGAGTATTGTGGCAAAAAAATGGGGAAAATCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGC
258 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGC
44381 C-AAGATCGTGTACT
322 CGAA-ATCGTGTACT
* ** *
44395 GACCATCACGGTTTTTGGCTAAAAATATGTTTCGGGGCCCTGACTAAGTTTTGCATGATTTTTGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* *
44460 C----AGA--T-T-G----A-C----TTC-TC----GAAATCTCTCAGCCACAATGCATTTACGG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGG
* * * * *
44503 ATTTATTTTTACAAGTATCTGAATCTTGTTTCGACTTATTTATAAATAAATTCAGAAAAAATTGG
131 ATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGG
* * * * *
44568 AAAAACAATATTAAAAGCCTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATACGATTTTTTT
196 AAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGA-TTTTTC
* * *
44633 TTAGTATTGAGGCAAAAAATTGGGGAAAAACTTTTCGGATCAGTTTTTTTGCAAAATTTTAGCCG
260 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCG
*
44698 AAATCGTGT-TT
324 AAATCGTGTACT
* * * * * *
44709 CGACTTATCACGGTTTTTTGGCTAAAAACGCGTTTCGGGGGCTTGACTCAATTTTGCATGATTTT
1 -AAC-CATCACGG-TTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTT
* *
44774 TGGCAGAAAGACTTCTCGAAATATCTATATTCATCTATTCAAATCTCTCAGCCACAATGCATTTA
63 TGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTA
* * * * *
44839 CAGATTTATTTTTACGAGTATCTGAATATTGTTTTGATTTAATTAGAAAAAATATTCAGAAAAAT
128 CGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAA-ATTCAGAAAAAA
* ** * * *
44904 ATGGAAAAACGATATTTGAAGCGTGAAAAATTCTGAAATATTTTTTGGCGTTGAATCATATGATT
192 ATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATA-GTTTTGGCGTTGAATTATATGATT
*
44969 TTTCTGAGTATTGTGG-AAAAAATTGGGGAAAAACTTTTCGTGTCAGTTTTTTG-AAAATTTTAG
256 TTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAG
45032 CCGAAATCGTGTACT
321 CCGAAATCGTGTACT
* * *
45047 AACCATCACGG-TTTTGGCT-AAAATCGCGCTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTG
1 AACCATCACGGTTTTTGGCTAAAAAT-GCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTG
* * * **
45110 GCAGGAAGACTTCTCGAAATATCTATATACATCTAATCAAATCTCTCAGCCACAATGCATTTATA
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
*
45175 GATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
*
45240 GAAAAACGATATTAGAAGCGTGTAAAACCCT-AAATAGTTTTGGCGTTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
* * * **
45304 TGAGTATTGTGGCAAGAAACTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGTTGA
260 TGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGA
45369 AATCGTGTACT
325 AATCGTGTACT
* * * *
45380 AACCATCACGG-TTTTGGCTAAAAACGCGTTTCGGAGCCATGACTCAGTTTTGCATGATTTTAGG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
* * * * * *
45444 CAGAGAGACTCCTCGAAATATCTTTATTCATCTAA-CAAA-ATCTC-GCAACATTGGATTTACGG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGG
* ** *
45506 ATTTGTTTTTACGAGTATCTGAATCTTGTTAAGATTTATTTAGAAATAAATTCAGAAAAAAAATG
131 ATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAAATG
* *
45571 GAAAAACGATATTAGAAGCGTGAAAAACCGTAAAATATTTTTGGCGTTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
* * *
45636 TGAGTATCGTGGCAAAAAATTGGGACAAAAAATTTTCGGGTCAGATTTTTTGCAAAATTTTAGCT
260 TGAGTATTGTGGCAAAAAATTGGG-GAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGC-
45701 C-AAATCGTGTACT
322 CGAAATCGTGTACT
* * * *
45714 AGCCATCACGGTTTTTTGCTAAAAATGCGTTTCGGGGCCCTCACTCAGTTTTGCATGATTTTTTG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
*
45779 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGG
66 CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGG
** *
45844 ATTTATTTTTAAAAGTATCTGAATCTTGTTTCGATTT-ATTTGTAAATAAATTCAGAAAAAAATT
131 ATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG-AAATAAATTCAGAAAAAAA-T
* * *
45908 GGCAAAATGATATTA-AGAGCGTGAAAAACCCTAAAATAGTTATGGCGTTGAATTATATGATTTT
194 GGAAAAACGATATTAGA-AGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTT
* * *
45972 TCTGAGTATTGAGGCAAAAAATGGGGGAAAAACTTTTCGGATCAGTTTTTTTGCAAAATTTTAGC
258 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGC
46037 CGAAATCGTGTACT
322 CGAAATCGTGTACT
* * * *
46051 AACCATCACAGTTTTTTGGCTAAAAACGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTG
1 AACCATCAC-GGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTG
*
46116 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACG
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
* * * *
46181 GATTTGTTTTTACGAGCATCTGAATCTTGTTACGATTTAATTAGAAATAAATTCAGAAAAAAATT
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATG
* *
46246 GAAAAATGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTTTC
195 GAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTC
* * * * * * *
46311 TAAGCATTGTGGC-AAAAATTGGGACAAAAACGTTTCGGGTCAGATTGTTGCAAAATTTTAGCCA
260 TGAGTATTGTGGCAAAAAATTGGG-GAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
46375 AAATCGTGTACT
324 AAATCGTGTACT
* * * * **
46387 GACCAACACGGTTTTTTGCTAAAAATGTGTTTCGGGGTTCTGACTCAGTTTTGCATGATTTTTTG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGA-TTTTTG
* * * * *
46452 GCAGAAAGACTTCTAGAAATATCTATATTCATCTAACCAAA--ACTCACCCACATTGGATTTACG
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
* * * *
46515 GATTTGTTTTGACGAGCATCTGAATCTTGTCAT-GATTTAATTAGAAATAAATTCAGAAAAAAAT
130 GATTTATTTTTACGAGTATCTGAATCTTGT-TTCGATTTAATTAGAAATAAATTCAGAAAAAAAT
* *
46579 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTAGGCGTTGAATGATATGATTTTT
194 GGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTT
*
46644 CTGAGTATTGTGAC-AAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
259 CTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCG
46708 AAATCGTGTACT
324 AAATCGTGTACT
* * * * *
46720 AACCATCACGGTTTTTTGGCTAAAAACGCTTTTCGGGGGCTTGACTCAATTTTGCATGATTTTTG
1 AACCATCACGG-TTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTG
* *
46785 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCATATCTCTCAGCCACAATGCATTTACG
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
* *
46850 GATTTATTTTTACGAGTATCTGAATCTTGTTTC-ATTTAATCAGAAAAAAAATTCAGAAAAAAAT
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG-AAATAAATTCAGAAAAAAAT
* ** * *
46914 GGAAAAAACGATATTTGAAGCGTGAAAAAATTCTGAAATATTTTTTGGCGTTGAATTATATGATT
194 GG-AAAAACGATATTAGAAGCGTG-AAAAACCCTAAAATA-GTTTTGGCGTTGAATTATATGA-T
*
46979 TTTTCTGAGTATTGTGG-AAAAAATTTGGGGAAAAACTTTTCGTGTCAGTTTTTTTG-AAAATTT
255 TTTTCTGAGTATTGTGGCAAAAAA-TTGGGGAAAAACTTTTCGGGTCAG-TTTTTTGCAAAA-TT
47042 TTAGCCGAAATCGTGTACT
317 TTAGCCGAAATCGTGTACT
* *
47061 AACCATCACGG-TTTTGGCTAAAAACGCGTTTCGGGGCCAT-AGCTCAGTTTTGCATGATTTTTG
1 AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGA-CTCAGTTTTGCATGATTTTTG
* * *
47124 GCAGAAAGACTCCTCGAAATATCTATATTCATCTAACCAAA--TCTCAGCCACATTGGATTTACG
65 GCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACG
* * **
47187 GATTTGTTTTTACGAGCATCTGAATCTTGTTAAGATTTAATTAGAAATAAATTCAGAAAAAAAAA
130 GATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG--AAAAAAA
*
47252 TGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCGTTGAATTATATGATTTT
193 TGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTT
* * *
47317 TCTGAGTATTGTGGCAAGAAATTTGGGAAAAACTTTTCAGGTCAGTTTTTTGCAAAATT
258 TCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATT
Statistics
Matches: 4102, Mismatches: 428, Indels: 222
0.86 0.09 0.05
Matches are distributed among these distances:
313 5 0.00
314 59 0.01
315 141 0.03
316 9 0.00
317 50 0.01
318 3 0.00
321 3 0.00
322 1 0.00
323 2 0.00
324 1 0.00
325 1 0.00
326 47 0.01
327 9 0.00
328 47 0.01
329 78 0.02
330 423 0.10
331 245 0.06
332 188 0.05
333 392 0.10
334 692 0.17
335 392 0.10
336 234 0.06
337 347 0.08
338 373 0.09
339 217 0.05
340 85 0.02
341 58 0.01
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (335 bp):
AACCATCACGGTTTTTGGCTAAAAATGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGG
CAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGG
ATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGG
AAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAGTTTTGGCGTTGAATTATATGATTTTTCT
GAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAA
ATCGTGTACT
Found at i:46435 original size:673 final size:669
Alignment explanation
Indices: 44475--47375 Score: 4167
Period size: 673 Copynumber: 4.3 Consensus size: 669
44465 TGACTTCTCG
*
44475 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGACTT
1 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
* * * * * *
44540 ATTTATAAATAAATTCAGAAAAAATTGGAAAAACAATATTAAAAGCCTGAAAAACCCTAAAATAG
66 AATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAG
* * * *
44605 TTTTGGCGTTGAATTATACGATTTTTTTTTAGTATTGAGGCAAAAAATTGGGGAAAAACTTTTCG
131 TTTTGGCGTTGAATTATATGA-TTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCG
* * *
44670 GATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGT-TTCGACTTATCACGGTTTTTTGGCTAA
195 GATCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACT-AAC-CATCACGGTTTTTTGGCTAA
*
44734 AAACGCGTTTCGGGGGCTTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATC
257 AAACGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATC
* *
44799 TATATTCATCTATTCAAATCTCTCAGCCACAATGCATTTACAGATTTATTTTTACGAGTATCTGA
322 TATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGA
* ** * *
44864 ATATTGTTTTGATTTAATTAGAAAAAATATTCAGAAAAATATGGAAAAACGATATTTGAAGCGTG
387 ATCTTGTTACGATTTAATTAGAAAAAA-ATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTG
** * *
44929 AAAAATTCTGAAATATTTTTTGGCGTTGAATCATATGATTTTTCTGAGTATTGTGGAAAAAATTG
451 AAAAACCCTAAAATATTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAATTG
* * *
44994 GGGAAAAACTTTTCGTGTCAGTTTTTTGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGT
516 GGCAAAAACTTTTCGGGTCAGATTTTTGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGT
* * *
45059 TTTGGCT-AAAATCGCGCTTCGGGGCCATGGCTCAGTTTTGCATGATTTTTGGCAGGAAGACTTC
581 TTTGGCTAAAAAT-GCGTTTCGGGGCCATGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTC
* *
45123 TCGAAATATCTATATACATCTAATC
645 TCGAAATATCTATATTCATCTAACC
**
45148 AAATCTCTCAGCCACAATGCATTTATAGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
1 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
*
45213 AATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGTAAAACCCT-AAATAG
66 AATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAG
* * *
45277 TTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAACTGGGGAAAATCTTTTCGG
131 TTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGG
* **
45342 GTCAGTTTTTTGCAAAATTTTAGTTGAAATCGTGTACTAACCATCACGG--TTTTGGCTAAAAAC
196 ATCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAAC
* * * * * *
45405 GCGTTTC-GGAGCCATGACTCAGTTTTGCATGATTTTAGGCAGAGAGACTCCTCGAAATATCTTT
261 GCGTTTCGGGGGCC-TGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTAT
* * * * *
45469 ATTCATCTAA-CAAA-ATCTC-GCAACATTGGATTTACGGATTTGTTTTTACGAGTATCTGAATC
325 ATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATC
* * *
45531 TTGTTAAGATTTATTTAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
390 TTGTTACGATTTAATTAGAAAAAAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* *
45596 AACCGTAAAATA-TTTTTGGCGTTGAATTATATGATTTTTCTGAGTATCGTGGCAAAAAATTGGG
454 AACCCTAAAATATTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGG-AAAAAATTGGG
* *
45660 ACAAAAAATTTTCGGGTCAGATTTTTTGCAAAATTTTAGCTC-AAATCGTGTACTAGCCATCACG
518 -CAAAAACTTTTCGGGTCAGA-TTTTTG-AAAATTTTAGC-CGAAATCGTGTACTAACCATCACG
* * * *
45724 GTTTTTTGCTAAAAATGCGTTTCGGGGCCCTCACTCAGTTTTGCATGATTTTTTGCAGAAAGACT
579 G-TTTTGGCTAAAAATGCGTTTCGGGGCCATGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
*
45789 TCTCGAAATATCTATATTCATCTAATC
643 TCTCGAAATATCTATATTCATCTAACC
*
45816 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTAAAAGTATCTGAATCTTGTTTCGATTT
1 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
* * *
45881 -ATTTGTAAATAAATTCAGAAAAAAATTGGCAAAATGATATTA-AGAGCGTGAAAAACCCTAAAA
66 AATTAG-AAATAAATTCAGAAAAAAA-TGGAAAAACGATATTAGA-AGCGTGAAAAACCCTAAAA
* * *
45944 TAGTTATGGCGTTGAATTATATGATTTTTCTGAGTATTGAGGCAAAAAATGGGGGAAAAACTTTT
128 TAGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTT
*
46009 CGGATCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTTGGCTAA
193 CGGATCAG-TTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAA
46074 AAACGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATC
257 AAACGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATC
* *
46139 TATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTGTTTTTACGAGCATCTGA
322 TATATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGA
* * *
46204 ATCTTGTTACGATTTAATTAGAAATAAATTCAGAAAAAAATTGAAAAATGATATTAGAAGCGTGA
387 ATCTTGTTACGATTTAATTAGAAAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGA
* * *
46269 AAAACCCTAAAATA-TTTTTGGCGTTGAATTATATGATTTTTCTAAGCATTGTGGCAAAAATTGG
452 AAAACCCTAAAATATTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAATTGG
* * * * *
46333 GACAAAAACGTTTCGGGTCAGATTGTTGCAAAATTTTAGCCAAAATCGTGTACTGACCAACACGG
517 G-CAAAAACTTTTCGGGTCAGATTTTTG-AAAATTTTAGCCGAAATCGTGTACTAACCATCACGG
* * *
46398 TTTTTTGCTAAAAATGTGTTTCGGGGTTC-TGACTCAGTTTTGCATGATTTTTTGGCAGAAAGAC
580 -TTTTGGCTAAAAATGCGTTTCGGGG-CCATGACTCAGTTTTGCATGA-TTTTTGGCAGAAAGAC
*
46462 TTCTAGAAATATCTATATTCATCTAACC
642 TTCTCGAAATATCTATATTCATCTAACC
* * * * * * * * *
46490 AAA--ACTCACCCACATTGGATTTACGGATTTGTTTTGACGAGCATCTGAATCTTGTCAT-GATT
1 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGT-TTCGATT
46552 TAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATA
65 TAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATA
* * *
46617 GTTTAGGCGTTGAATGATATGATTTTTCTGAGTATTGTGAC-AAAAATTGGGGAAAAACTTTTCG
130 GTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCG
*
46681 GGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAA
195 GATCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAA
* *
46746 CGCTTTTCGGGGGCTTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTAT
260 CGCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTAT
*
46811 ATTCATCTAATCATATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATC
325 ATTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATC
* * *
46876 TTGTTTC-ATTTAATCAGAAAAAAAATTCAGAAAAAAATGGAAAAAACGATATTTGAAGCGTGAA
390 TTGTTACGATTTAATTAG-AAAAAAATTCAGAAAAAAATGG-AAAAACGATATTAGAAGCGTG-A
** *
46940 AAAATTCTGAAATATTTTTTGGCGTTGAATTATATGATTTTTTCTGAGTATTGTGGAAAAAATTT
452 AAAACCCTAAAATATTTTTTGGCGTTGAATTATATGA-TTTTTCTGAGTATTGTGGAAAAAA-TT
* * *
47005 GGGGAAAAACTTTTCGTGTCAGTTTTTTTGAAAATTTTTAGCCGAAATCGTGTACTAACCATCAC
515 GGGCAAAAACTTTTCGGGTCAG-ATTTTTGAAAA-TTTTAGCCGAAATCGTGTACTAACCATCAC
*
47070 GGTTTTGGCTAAAAACGCGTTTCGGGGCCAT-AGCTCAGTTTTGCATGATTTTTGGCAGAAAGAC
578 GGTTTTGGCTAAAAATGCGTTTCGGGGCCATGA-CTCAGTTTTGCATGATTTTTGGCAGAAAGAC
*
47134 TCCTCGAAATATCTATATTCATCTAACC
642 TTCTCGAAATATCTATATTCATCTAACC
* * * * * **
47162 AAA--TCTCAGCCACATTGGATTTACGGATTTGTTTTTACGAGCATCTGAATCTTGTTAAGATTT
1 AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
47225 AATTAGAAATAAATTCAGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAAT
66 AATTAGAAATAAATTCAG--AAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAAT
* * *
47290 ATTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAGAAATTTGGGAAAAACTTTTC
129 AGTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTC
47355 AGG-TCAGTTTTTTGCAAAATT
194 -GGATCAGTTTTTTGCAAAATT
Statistics
Matches: 2011, Mismatches: 175, Indels: 82
0.89 0.08 0.04
Matches are distributed among these distances:
663 44 0.02
664 108 0.05
665 20 0.01
666 14 0.01
667 112 0.06
668 168 0.08
669 249 0.12
670 145 0.07
671 167 0.08
672 236 0.12
673 352 0.18
674 205 0.10
675 122 0.06
676 69 0.03
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (669 bp):
AAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACAAGTATCTGAATCTTGTTTCGATTT
AATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATAG
TTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAACTTTTCGG
ATCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAAAC
GCGTTTCGGGGGCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATA
TTCATCTAATCAAATCTCTCAGCCACAATGCATTTACGGATTTATTTTTACGAGTATCTGAATCT
TGTTACGATTTAATTAGAAAAAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAA
CCCTAAAATATTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAATTGGGCAA
AAACTTTTCGGGTCAGATTTTTGAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTGG
CTAAAAATGCGTTTCGGGGCCATGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAA
TATCTATATTCATCTAACC
Done.