genome.fa.s22448.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022448.1 Corchorus olitorius cultivar O-4 contig22481, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140121

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567--1933	332	4.2	330	78	8	1254	33	13	15	38	1.85
6462--6657	99	2.0	99	92	2	331	26	25	13	34	1.93
8904--8947	13	3.4	13	75	12	54	22	2	15	59	1.48
11118--15390	333	12.8	330	76	10	3340	36	15	14	33	1.88
16542--16592	13	4.2	13	82	12	72	58	0	17	23	1.38
16546--16592	18	2.5	20	80	19	66	59	0	17	23	1.37
16619--16649	13	2.3	14	94	5	55	58	0	16	25	1.38
19032--19078	22	2.1	22	100	0	94	21	6	25	46	1.74
20634--20716	43	1.9	43	85	0	112	34	8	14	42	1.76
20612--20724	22	5.2	21	74	4	82	34	7	15	43	1.73
21510--21549	22	1.9	22	85	10	57	42	7	17	32	1.77
21539--21602	22	2.9	22	69	17	60	32	7	12	46	1.70
21539--21634	40	2.3	42	80	7	106	36	8	11	43	1.71
23337--23376	18	2.2	18	95	0	71	40	10	5	45	1.60
23608--23680	38	1.9	38	97	0	137	50	10	10	27	1.71
24729--24820	22	4.2	22	85	0	112	38	16	10	34	1.84
24729--24866	44	3.2	43	79	6	143	39	17	11	31	1.85
24911--25206	22	13.3	22	70	12	171	34	17	10	38	1.84
29813--29848	18	1.9	19	88	5	56	72	8	13	5	1.27
35729--35758	15	2.0	15	93	0	51	30	0	0	70	0.88
36275--36304	13	2.3	13	94	0	51	40	10	0	50	1.36
36453--36499	19	2.5	19	96	3	87	59	10	0	29	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44052--44214	60	2.7	60	88	7	267	33	18	20	27	1.96
44048--44212	31	5.5	30	68	18	103	33	18	20	27	1.96
44083--44183	29	3.4	29	74	15	107	32	18	20	27	1.96
44257--44421	31	5.5	31	69	16	121	29	18	18	34	1.94
44255--44417	60	2.7	59	89	1	245	28	17	18	34	1.94
45235--45288	25	2.1	26	86	6	74	64	5	9	20	1.42
47404--47428	2	12.5	2	100	0	50	48	0	0	52	1.00
48652--48899	62	4.0	62	99	0	487	29	17	22	30	1.97
48931--48973	13	3.2	13	83	3	59	27	2	18	51	1.59
49528--49630	32	3.2	32	88	2	161	45	5	19	29	1.73
49814--49848	17	2.1	17	100	0	70	28	5	22	42	1.76
49816--49856	17	2.4	17	91	0	64	31	4	29	34	1.79
51486--51523	4	9.8	4	88	5	51	47	21	0	31	1.51
56920--56969	19	2.6	19	80	3	55	52	10	16	22	1.73
64889--64922	2	17.5	2	93	6	61	50	0	0	50	1.00
65071--65102	2	16.5	2	93	6	57	53	0	0	46	1.00
65071--65100	15	2.0	15	100	0	60	53	0	0	46	1.00
65071--65105	17	2.1	17	100	0	70	54	0	0	45	0.99
68237--68476	115	2.1	116	91	3	385	51	5	12	30	1.61
75492--75737	126	2.0	126	96	0	456	38	22	15	22	1.92
83292--83350	30	2.0	30	100	0	118	50	13	15	20	1.77
89318--89350	12	2.6	13	90	4	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90023--90059	16	2.3	16	90	0	56	35	40	16	8	1.78
91045--91134	16	5.6	16	70	10	76	37	41	15	5	1.71
91045--91134	32	2.8	32	91	0	144	37	41	15	5	1.71
92517--92556	2	20.0	2	100	0	80	50	0	0	50	1.00
101361--101390	8	3.9	8	95	4	53	46	0	13	40	1.43
101359--101396	15	2.6	15	84	15	53	42	0	15	42	1.47
106829--106972	47	3.1	47	93	0	234	20	15	15	49	1.80
106985--107011	13	2.1	13	100	0	54	51	7	22	18	1.70
109703--109753	24	2.1	24	100	0	102	37	11	17	33	1.86
109861--109933	33	2.2	34	97	2	139	46	6	13	32	1.70
117927--117952	1	26.0	1	100	0	52	0	0	0	100	0.00
123109--123134	9	2.9	9	100	0	52	7	34	0	57	1.27
137166--137236	34	2.1	34	100	0	142	29	29	15	25	1.96
139417--139576	70	2.3	69	91	5	268	19	30	23	26	1.98

Tables:   1

The End!