Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002245.1 Corchorus olitorius cultivar O-4 contig02245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30


Found at i:658 original size:30 final size:30

Alignment explanation


    Indices: 624--733  Score: 85
    Period size: 29  Copynumber: 3.9  Consensus size: 30

        614 GACGCAGGGA

                                          
        624 CAAAACAATTTTTTTTTTTTTAAGAAAACG
          1 CAAAACAATTTTTTTTTTTTTAAGAAAACG

                       **         *     * 
        654 CAAAACAA---AATTTTTTTTATG---AGG
          1 CAAAACAATTTTTTTTTTTTTAAGAAAACG

                   *              *        
        678 CAAAA-ACTTTCTTTTTTTTTTCA-AAAACG
          1 CAAAACAATTT-TTTTTTTTTTAAGAAAACG

                 *                      
        707 CAAAAAAATTTTTTTTTTTTT-AGAAAA
          1 CAAAACAATTTTTTTTTTTTTAAGAAAA

        734 AAAACGGAAA


Statistics
Matches: 60,  Mismatches: 11, Indels: 19
        0.67            0.12        0.21

Matches are distributed among these distances:
  23    1  0.02
  24    7  0.12
  27   18  0.30
  28    1  0.02
  29   21  0.35
  30   12  0.20

ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44


Consensus pattern (30 bp):   
CAAAACAATTTTTTTTTTTTTAAGAAAACG
Done.