Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022451.1 Corchorus olitorius cultivar O-4 contig22484, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10272
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36
Found at i:2249 original size:25 final size:25
Alignment explanation
Indices: 2219--2268 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
2209 TTTTAACTAA
*
2219 TTCGGAATCAGGCTGTATCAGATTC
1 TTCGGAATCAGGCTGCATCAGATTC
2244 TTCGGAATCAGGCTGCATCAGATTC
1 TTCGGAATCAGGCTGCATCAGATTC
2269 CAATTGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (25 bp):
TTCGGAATCAGGCTGCATCAGATTC
Found at i:2721 original size:13 final size:14
Alignment explanation
Indices: 2698--2728 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
2688 TTTTATAAAA
2698 AAAATTATTTTTTT
1 AAAATTATTTTTTT
2712 AAAA-TATTTTTTT
1 AAAATTATTTTTTT
2725 AAAA
1 AAAA
2729 AAATAGTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
AAAATTATTTTTTT
Found at i:2779 original size:31 final size:30
Alignment explanation
Indices: 2738--2811 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
2728 AAAATAGTCG
*
2738 GGGACCCAATTGCTCAATTAACTTCACTTCA
1 GGGACCCAATTGCTC-ACTAACTTCACTTCA
* * **
2769 GGGACTCAATTGTTCACTATGTTCACTTCA
1 GGGACCCAATTGCTCACTAACTTCACTTCA
*
2799 GGGACCCATTTGC
1 GGGACCCAATTGC
2812 ACATTTTCCC
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
30 22 0.63
31 13 0.37
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (30 bp):
GGGACCCAATTGCTCACTAACTTCACTTCA
Found at i:3688 original size:19 final size:20
Alignment explanation
Indices: 3664--3717 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
3654 TCACCCAATT
3664 TTTTTAAAAAATAT-ATATA
1 TTTTTAAAAAATATAATATA
* * *
3683 TTTTTAAAAAAAATAATTTT
1 TTTTTAAAAAATATAATATA
3703 TTTTATAAAAAATAT
1 TTTT-TAAAAAATAT
3718 GACGTGGCAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 13 0.45
20 7 0.24
21 9 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTTTAAAAAATATAATATA
Found at i:4383 original size:5 final size:5
Alignment explanation
Indices: 4373--4399 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4363 TTTTGTAGAA
4373 ATCTT ATCTT ATCTT ATCTT ATCTT AT
1 ATCTT ATCTT ATCTT ATCTT ATCTT AT
4400 TATCCTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (5 bp):
ATCTT
Found at i:4697 original size:15 final size:14
Alignment explanation
Indices: 4670--4714 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
4660 CTAATAATCA
4670 ATTTTATATTATAAT
1 ATTTTA-ATTATAAT
4685 ATATTTAATTATAAT
1 AT-TTTAATTATAAT
*
4700 ATTATTATTTATAAT
1 ATT-TTAATTATAAT
4715 CATGAAACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 1 0.04
15 22 0.81
16 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTTAATTATAAT
Found at i:6072 original size:334 final size:329
Alignment explanation
Indices: 5061--8554 Score: 2612
Period size: 334 Copynumber: 10.6 Consensus size: 329
5051 ATACTTGACA
* * * * *
5061 TCATCTAACCAAATCTCAAG-AACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATATTT
1 TCATCTAATCAAATCTC-AGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * * *
5125 TTTCGATTTAATTAGAAATTAATTTAGAAAAAATAAGAAATACGATATTAAAAGCGTAAAAAACC
65 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGT-GAAAAGC
* * * * ** *
5190 CTGT-AATCTTTTTGGCGTTGAATTATGTATTTTTATGATTTTTTTAACCAAAAATTGAGGAGAA
129 CT-TCAATCTTTTTGGAGTTGAATTATATATTTTTATGAGTATTTTGTCCAAAAATTGAGGAAAA
* * * *
5254 ATCTTTCGTATCATTTTTTGCAAACTTTTAGCCGAAATCGTGTACTACTACTAACAAACCATCAC
193 ATTTTTGGTA--ATTTTTTGCAAAATTTTAGCCGAAATCGTG---TA--A-TAAC---TCATCAC
* * * * * * *
5319 AGTTTTTTGGCTAAAAACGAGTTCCAGGGACTCGGCTCAATTTTGCGA-GATTTTTGGCTCCGAG
247 -GGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGC-ATGATTTTTGGCGCCGAG
*
5383 ACTACTTGAAATATCTATAT
310 ACTCCTTGAAATATCTATAT
* * * * *
5403 TCATTTAATCAAATCTCAACCAAATTGAATTTAAGGATTTGTTTTTACGAGCATCTAAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* ** * *
5468 TTCAATTTAATTAGAAATTAATTTGGAAAAAATA-GGAAAACGATATTAGAAA-CGTCAAAAGCA
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTA-AAAGCGTGAAAAGC-
* * * * *
5531 CTTCAATCTTTTTGGTGTTAAATTATATATTTTTCATGAGCATTTTATCCAAAAATTGAGGAAAT
129 CTTCAATCTTTTTGGAGTTGAATTATATATTTTT-ATGAGTATTTTGTCCAAAAATTGAGGAAAA
* * * * * * * **
5596 ATCTTTCGGGTAAATTTTTACAAAATTTTAGCTGAAATTGTGTAATAGC-CATCACAGTTTTCAG
193 AT-TTT-TGGTAATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTTTTTGG
* ** * * * *
5660 CTAAAAAAGCGTTATGGGGCCCCGGCTCAGTTTTGCATGATTTTCGACGCCAAGACTCCTTGAGA
256 CTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAA
*
5725 TATCCATAT
321 TATCTATAT
* * * **
5734 TCATCTAATCAAATTTTAGCCACATTGGATTTAAGAATTTGTTTTTAAAAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* *
5799 TTCGATTTAATTGGAAATTAATTCAGAAAAAGTATGAAAAACGATATTAAAAGCGTGAAAAGTCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAG-CC
* *
5864 TCCAATCTTTTTGGAGTTAAATTAT-TGATATTTTATGAGTATTTTGTCCAAAAATTGAGGAAAA
130 TTCAATCTTTTTGGAGTTGAATTATAT-AT-TTTTATGAGTATTTTGTCCAAAAATTGAGGAAAA
* * * *
5928 ATTTTTGAGTAATTTTTTTTTGTAAAATTTTAGCCAAAATCATGTACTAACT-ATCACGGTTTTT
193 ATTTTTG-GTAA---TTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTTTTT
* * * * *
5992 GGCTAAAAACGCGTTTCGGGGCCCCAGCTCAGTTTTGCATGATTTTTGGCGCCGATAGTTCTTGA
254 GGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGA
6057 AATATCTATAT
319 AATATCTATAT
* * * *
6068 TCATCTAATAAAATCTTAGCCACATTGCATTTAAGGATTTATTTTTACGAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * *
6133 TTCGATTTAATTAGAAATTAATTCTGGAAAAATATGGAAAACGATATTAAATGCGTGAAAAGCCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAG-CC
* * * * *
6198 TTCAATCTTTTT-GATGTTGAATTATATATTTTTTTCAAGTATTATGGCTAAAAATTGAGGAAAT
130 TTCAATCTTTTTGGA-GTTGAATTATATATTTTTAT-GAGTATTTTGTCCAAAAATTGAGGAAA-
** * * *
6262 AACTTTCGGGTCAATTTTTTGCAAAACTTTAGCCGAAATCGTATAATAA-TCATTACGGTTTTTT
192 AA-TTTTTGGT-AATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGG--TTTT
* * * * ** * * * *
6326 TTG-TCAAAAACGCGTACCGAGG-CCCGGTTCAAATTTGAATGATTTTTGGCACTGAGACTCTTT
253 TGGCT-AAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTT
6389 GAAATATCTATAT
317 GAAATATCTATAT
* *
6402 TCATCTAA-CGAGATC-CAG-C-C-------------A-TTGTTTTTACAAGCATCTGAATCTTG
1 TCATCTAATC-AAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTG
* * * *
6449 TTTTGTTTTAATTAGAAATTAATTCAGAAAAAATAGGAAAAACGATATTAGAAGCGTGAAAAAAG
65 TTTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTG--AAAAG
* * * * *
6514 CCTTCAATCTTTTTGGCGTTTGAATTATATATTTTTATTAGTATTGTGGCTAAAAATTGAGGAAA
128 CCTTCAATCTTTTTGGAG-TTGAATTATATATTTTTATGAGTATTTTGTCCAAAAATTGAGGAAA
* * *
6579 AATATTTTGGATCAA-TTTTTGCAAAATATTAGCCGAAACCGTG---TAA--CATCACAGTTTTT
192 AAT-TTTTGG-T-AATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTTTTT
** **** * ** * *** *
6638 -TTTTTTTA--TGTAACGGGGCCCCGG-GCAGTTTTGCATGATTTTTTATGCCAAGACTCCTTGA
254 GGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGA
6699 AATATCTATAT
319 AATATCTATAT
* * *
6710 TCATCTAATCAAATCTCAGCCACATTGGGTTTAAGGATTTGTTTTTACGAGGATCTAAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * ** *
6775 TTCGATTTAATTAGAAATTAATTCGGAAAAATTAT--ATTA-GATGCTTAAAA-----AAAA-CC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGAT-ATTAAAAGCGTGAAAAGCC
* * * * *
6831 TTTCTATATTTTTGGCGTTGAATTATATATTATTTATGAGTATTTTAG--CAAAAATATTATGAA
130 -TTCAATCTTTTTGGAGTTGAATTATATATT-TTTATGAGTATTTT-GTCCAAAAAT-TGAGGAA
* * * * *
6894 ATATCTTTCCGGTCAA-TTTTTACAAAATTTTAGCCGAAATCATGTAATAA-TCATCTCGGTTTT
191 AAAT-TTT-TGGT-AATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTTTT
* * * * * ** *
6957 TGGGTAAAAACGCGTTCCAGGACTCCGGGC-CAGTTTTGCATTATTTTTGGCGCTAAGACTCCTC
253 TGGCTAAAAACGCGTTCCGGGGC-CCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTT
* *
7021 CAGATAT-TCATAT
317 GAAATATCT-ATAT
* * * *
7034 TCATCTAATCAAATCTAAGCCACACTGTATTTAAGGATTTATTTTTACGAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* ** * *
7099 TTCGATTTAATTAGAAATTAATTCATAAAAAAATATGAAAAATAATATGAAAAGCGTGAAAAATC
66 TTCGATTTAATTAGAAATTAATTCA-GAAAAAATATGAAAAACGATATTAAAAGCGTG-AAAAGC
* * * * * *
7164 CTCCAATCTTTTTAGAATTAAATTATATATATTTCATGAGTATTTTAG-CCAAAAATTGGGGAAA
129 CTTCAATCTTTTTGGAGTTGAATTATATAT-TTTTATGAGTATTTT-GTCCAAAAATTGAGG-AA
* * * *
7228 AAAGTTTTTGG-ATATTTTTTGCAAAATTTTAGACGAAATTGTATACTAA-TCATCACGGTTTTT
191 AAA-TTTTTGGTA-ATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGG-TTTT
* * * * * *
7291 TTGCTAAAAATGCGTTTCGGGGTCCCGGCTCAGTTTTGCATGGTTTTTGGCGTCGAGACTCCTTG
253 TGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTG
7356 AAATATCTATAT
318 AAATATCTATAT
* * * *
7368 TCATCTAATCAAATCTCAGCCACATTGCATTTAAGAATTTCTTTTCACGAGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
*
7433 TTCGATTTAATTAGAAATTAATTCA-AAAAAATATGAAAAACAATATTAAAAGCGTGAAAAGTCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAG-CC
* * * * * *
7497 TCCAATTTTTTTGGAGTTTAATTATATATATTTTATGAGTATTTTATACAAAAATGGAGGAAAAT
130 TTCAATCTTTTTGGAGTTGAATTATATAT-TTTTATGAGTATTTTGTCCAAAAATTGAGGAAAA-
** * * *
7562 ATTTCAGGTCAA-TTTTTGCAAAATATTAGCGGAAATCATGTAGGTTTAGGGTTTCACGATTTTT
193 ATTTTTGGT-AATTTTTTGCAAAATTTTAGCCGAAATC--GT--G--TA----AT-A--A-----
* * *** * ** *
7626 CGTGTTCCAGGGTCACGATTTTTGGCTAAAAACGCATTCCAAAGCCCTGTATCAATTTTGCATGA
239 C----T-CA---TCACGGTTTTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGA
* * * * *
7691 TTTTTGGGGTCAAGACTCTTTAAAATATATCTATAT
296 TTTTTGGCGCCGAGACTCCTT-GAA-ATATCTATAT
* * * ** ** * *
7727 TCTTCTAACCAAATCTCTGCCACATTGTCTTTAAGGATTTGTTTTTACGAGTTTCTAAATCGTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * ** * *
7792 TTCGGTTT-ATCAAAAATTAATTTGGAAATAAAATAGGAAAAACGATATTAGAAGCGTGAAAAAG
66 TTCGATTTAATTAGAAATTAATTCAG-AA-AAAATATGAAAAACGATATTAAAAGCGTG-AAAAG
* * * * * *
7856 ACTTTCAAT-TTTTTGGCA-TTGAATTATATAGTTTTAATAATTATTTT-TCCTAAAATCGA-GA
128 -CCTTCAATCTTTTTGG-AGTTGAATTATATA-TTTTTATGAGTATTTTGTCCAAAAATTGAGGA
* * *
7917 AAAATTCTTTCGGGTCAA-TTTTTGTAAAATTTTAGCCGAAATCGTATACTAAC-CATCACGGTT
190 AAAATT-TTT--GGT-AATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTT
* * * * * *
7980 TTCGGCTAAAAAACGCGTTCCGCGG-CCCGACTCAGTTTTGCATGATTTTTGGTGTCAAGACTCC
251 TTTGGCT-AAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCC
*
8044 TTGAAATATTTATAT
315 TTGAAATATCTATAT
* * * * *
8059 TTATCTAACCAAATCTCAGCCACATTAGATTTAAGGATTTGTTTTTACGAGCATCTGAGTCTTAT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
* * * * * *
8124 CTT-GATTTAATTAGAAATTAATTCAGAAAAAAATAGGAAATACAATATTGAAAGCGTTAAAAAC
66 -TTCGATTTAATTAGAAATTAATTCAG-AAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGC
* * *
8188 CTTTCAATATTTTT-TATGTTGAATTATATATTTTTTATGAGTATTCTAG-CCAAAAATTGA-GA
129 C-TTCAATCTTTTTGGA-GTTGAATTATATA-TTTTTATGAGTATT-TTGTCCAAAAATTGAGGA
* * * * *
8250 AAATATCTTTCAGGCAA-TTTTTACAAAATTTTAGCCTAAATCGTGTACTAAC-CATCACGGTTT
190 AAA-AT-TTT-TGGTAATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGG-TT
** * *
8313 TTTGGCT-AAAA-----T-C---G--CCTTC-CAG----G-ATCA----TGGCGCTGAGACTCCT
251 TTTGGCTAAAAACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCT
** *
8356 TGATTTATCTTTAT
316 TGAAATATCTATAT
* * *
8370 TCATCTAATCAAATCTCAACCACATTGGATTTAAGGATTTGTTTTTATGTGCATCTGAATCTTGT
1 TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
** * * * * * * *
8435 TTTAATTTAATTTGAAAATAATTTAGAAGAAATATGAAAAAGGATATTAGAAGCGTAAAAAGTCC
66 TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAG-CC
* *
8500 TCCAATCTTTTTTGGCA-TTGAATTATATATATTTTAAGAGTACTTTT-TCCAAAAA
130 TTCAATC-TTTTTGG-AGTTGAATTATATAT-TTTTATGAGTA-TTTTGTCCAAAAA
8555 AATGAGAAAA
Statistics
Matches: 2537, Mismatches: 460, Indels: 341
0.76 0.14 0.10
Matches are distributed among these distances:
308 56 0.02
309 9 0.00
310 37 0.01
311 142 0.06
312 2 0.00
313 7 0.00
314 3 0.00
315 25 0.01
316 71 0.03
317 107 0.04
318 45 0.02
319 27 0.01
320 14 0.01
321 5 0.00
322 4 0.00
323 14 0.01
324 124 0.05
325 63 0.02
326 1 0.00
327 7 0.00
328 2 0.00
330 4 0.00
331 207 0.08
332 327 0.13
333 183 0.07
334 527 0.21
335 41 0.02
336 9 0.00
337 5 0.00
339 2 0.00
340 6 0.00
341 46 0.02
342 140 0.06
343 3 0.00
344 4 0.00
348 1 0.00
350 1 0.00
351 1 0.00
354 1 0.00
355 4 0.00
357 52 0.02
358 22 0.01
359 78 0.03
360 11 0.00
361 84 0.03
362 13 0.01
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.37
Consensus pattern (329 bp):
TCATCTAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATTAATTCAGAAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGCCT
TCAATCTTTTTGGAGTTGAATTATATATTTTTATGAGTATTTTGTCCAAAAATTGAGGAAAAATT
TTTGGTAATTTTTTGCAAAATTTTAGCCGAAATCGTGTAATAACTCATCACGGTTTTTGGCTAAA
AACGCGTTCCGGGGCCCCGGCTCAGTTTTGCATGATTTTTGGCGCCGAGACTCCTTGAAATATCT
ATAT
Found at i:9591 original size:36 final size:36
Alignment explanation
Indices: 9544--9613 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
9534 TTCAATAACC
* *
9544 TTACATTTTTTGTGATTTTGGTTATCATATTTCTTA
1 TTACATTTTTTGTAATTTTGATTATCATATTTCTTA
9580 TTACATTTTTTGTAATTTTGATTATCATATTTCT
1 TTACATTTTTTGTAATTTTGATTATCATATTTCT
9614 CCAAAATCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.61
Consensus pattern (36 bp):
TTACATTTTTTGTAATTTTGATTATCATATTTCTTA
Done.